Information for motif5


Reverse Opposite:

p-value:1e-165
log p-value:-3.802e+02
Information Content per bp:1.458
Number of Target Sequences with motif265.0
Percentage of Target Sequences with motif6.95%
Number of Background Sequences with motif16.8
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets100.9 +/- 50.0bp
Average Position of motif in Background83.4 +/- 38.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0046.1_HNF1A/Jaspar

Match Rank:1
Score:0.88
Offset:0
Orientation:forward strand
Alignment:AGTTAATGATTA--
GGTTAATAATTAAC

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:2
Score:0.83
Offset:0
Orientation:forward strand
Alignment:AGTTAATGATTA-
GGTTAAACATTAA

MA0153.1_HNF1B/Jaspar

Match Rank:3
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:AGTTAATGATTA-
-GTTAAATATTAA

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.69
Offset:4
Orientation:forward strand
Alignment:AGTTAATGATTA
----AATAATT-

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGTTAATGATTA
-GKTAATGR---

PH0051.1_Hoxa4/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAATGATTA---
CNAGTTAATTAATAANN

PH0018.1_Dbx1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGTTAATGATTA----
TAATTAATTAATAATTA

PH0143.1_Pou2f1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGTTAATGATTA---
TACTTAATTAATNNAN

PH0019.1_Dbx2/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGTTAATGATTA-
TTTAATTAATTAATTC

PH0154.1_Prrx1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AGTTAATGATTA--
ANNAGTTAATTAGTTAN