Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3814)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 2271)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-136	-3.145e+02	0.0000	304.0	7.97%	29.3	1.29%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-130	-3.016e+02	0.0000	484.0	12.69%	78.5	3.45%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-125	-2.882e+02	0.0000	641.0	16.80%	133.9	5.88%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-125	-2.880e+02	0.0000	451.0	11.82%	71.2	3.13%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-122	-2.832e+02	0.0000	782.0	20.50%	187.7	8.24%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-121	-2.807e+02	0.0000	390.0	10.22%	55.7	2.45%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-120	-2.780e+02	0.0000	480.0	12.58%	82.5	3.62%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-120	-2.777e+02	0.0000	548.0	14.36%	104.1	4.57%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-117	-2.702e+02	0.0000	530.0	13.89%	100.8	4.42%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-113	-2.607e+02	0.0000	549.0	14.39%	109.1	4.79%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-111	-2.573e+02	0.0000	639.0	16.75%	142.9	6.28%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-110	-2.536e+02	0.0000	343.0	8.99%	47.2	2.07%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-92	-2.122e+02	0.0000	831.0	21.78%	237.8	10.44%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-91	-2.111e+02	0.0000	304.0	7.97%	44.8	1.97%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-89	-2.065e+02	0.0000	505.0	13.24%	110.3	4.84%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-88	-2.040e+02	0.0000	511.0	13.39%	113.0	4.96%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-78	-1.816e+02	0.0000	490.0	12.84%	113.7	4.99%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-66	-1.526e+02	0.0000	58.0	1.52%	1.4	0.06%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-63	-1.469e+02	0.0000	764.0	20.03%	243.4	10.69%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-59	-1.375e+02	0.0000	66.0	1.73%	2.4	0.11%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-59	-1.374e+02	0.0000	585.0	15.33%	170.7	7.49%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-59	-1.370e+02	0.0000	715.0	18.74%	227.4	9.98%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-59	-1.367e+02	0.0000	888.0	23.28%	307.2	13.49%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-58	-1.346e+02	0.0000	660.0	17.30%	204.5	8.98%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-54	-1.261e+02	0.0000	1096.0	28.73%	417.8	18.35%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-53	-1.240e+02	0.0000	480.0	12.58%	133.2	5.85%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-52	-1.206e+02	0.0000	884.0	23.17%	317.2	13.93%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-52	-1.203e+02	0.0000	674.0	17.67%	219.4	9.63%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-51	-1.180e+02	0.0000	446.0	11.69%	122.2	5.37%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-49	-1.135e+02	0.0000	117.0	3.07%	12.1	0.53%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-44	-1.028e+02	0.0000	657.0	17.22%	223.1	9.80%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-41	-9.633e+01	0.0000	273.0	7.16%	64.4	2.83%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-40	-9.286e+01	0.0000	352.0	9.23%	96.2	4.22%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-40	-9.216e+01	0.0000	290.0	7.60%	72.9	3.20%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-38	-8.961e+01	0.0000	282.0	7.39%	70.4	3.09%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-36	-8.498e+01	0.0000	407.0	10.67%	123.1	5.40%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-36	-8.404e+01	0.0000	530.0	13.89%	178.7	7.85%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-35	-8.139e+01	0.0000	121.0	3.17%	18.9	0.83%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-33	-7.763e+01	0.0000	142.0	3.72%	25.8	1.13%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-30	-6.993e+01	0.0000	799.0	20.94%	320.9	14.09%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-28	-6.650e+01	0.0000	68.0	1.78%	7.7	0.34%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-28	-6.470e+01	0.0000	901.0	23.62%	378.4	16.62%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-27	-6.444e+01	0.0000	292.0	7.65%	86.9	3.81%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-26	-6.202e+01	0.0000	1503.0	39.40%	708.6	31.12%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-26	-6.135e+01	0.0000	522.0	13.68%	192.6	8.46%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-25	-5.963e+01	0.0000	388.0	10.17%	131.6	5.78%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-25	-5.931e+01	0.0000	91.0	2.39%	14.2	0.62%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-25	-5.776e+01	0.0000	168.0	4.40%	40.5	1.78%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-24	-5.694e+01	0.0000	145.0	3.80%	32.4	1.42%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-23	-5.349e+01	0.0000	187.0	4.90%	49.3	2.17%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-22	-5.154e+01	0.0000	156.0	4.09%	38.6	1.70%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-22	-5.076e+01	0.0000	88.0	2.31%	15.9	0.70%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-21	-4.974e+01	0.0000	146.0	3.83%	35.1	1.54%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-20	-4.735e+01	0.0000	499.0	13.08%	194.7	8.55%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-20	-4.645e+01	0.0000	387.0	10.14%	141.9	6.23%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-20	-4.626e+01	0.0000	158.0	4.14%	41.9	1.84%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-19	-4.578e+01	0.0000	279.0	7.31%	92.0	4.04%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-19	-4.497e+01	0.0000	300.0	7.86%	102.7	4.51%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-19	-4.438e+01	0.0000	511.0	13.39%	203.2	8.92%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-18	-4.359e+01	0.0000	69.0	1.81%	11.8	0.52%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-18	-4.212e+01	0.0000	1025.0	26.87%	475.3	20.87%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-18	-4.175e+01	0.0000	71.0	1.86%	12.1	0.53%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-16	-3.909e+01	0.0000	318.0	8.34%	116.0	5.09%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-16	-3.888e+01	0.0000	232.0	6.08%	76.7	3.37%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-16	-3.857e+01	0.0000	1986.0	52.06%	1030.3	45.24%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-15	-3.615e+01	0.0000	732.0	19.19%	327.1	14.36%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-15	-3.586e+01	0.0000	333.0	8.73%	125.3	5.50%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-15	-3.520e+01	0.0000	81.0	2.12%	17.9	0.79%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-14	-3.422e+01	0.0000	179.0	4.69%	56.6	2.48%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-14	-3.416e+01	0.0000	105.0	2.75%	26.4	1.16%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-14	-3.365e+01	0.0000	20.0	0.52%	0.6	0.02%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-13	-3.212e+01	0.0000	429.0	11.25%	176.7	7.76%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-13	-3.126e+01	0.0000	627.0	16.44%	279.5	12.27%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-13	-3.116e+01	0.0000	816.0	21.39%	380.6	16.72%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-13	-3.071e+01	0.0000	593.0	15.54%	262.7	11.54%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-13	-3.069e+01	0.0000	512.0	13.42%	220.2	9.67%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-13	-3.039e+01	0.0000	150.0	3.93%	47.0	2.06%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-12	-2.960e+01	0.0000	383.0	10.04%	156.7	6.88%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-12	-2.949e+01	0.0000	238.0	6.24%	86.5	3.80%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-12	-2.883e+01	0.0000	213.0	5.58%	75.2	3.30%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-12	-2.853e+01	0.0000	249.0	6.53%	92.8	4.07%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-12	-2.840e+01	0.0000	301.0	7.89%	117.1	5.14%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-11	-2.623e+01	0.0000	257.0	6.74%	98.2	4.31%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-11	-2.577e+01	0.0000	85.0	2.23%	22.4	0.98%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-10	-2.444e+01	0.0000	86.0	2.25%	23.3	1.02%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-10	-2.342e+01	0.0000	114.0	2.99%	35.8	1.57%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-10	-2.328e+01	0.0000	261.0	6.84%	103.8	4.56%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-10	-2.325e+01	0.0000	58.0	1.52%	13.1	0.57%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-9	-2.293e+01	0.0000	590.0	15.47%	274.0	12.03%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-9	-2.239e+01	0.0000	357.0	9.36%	152.1	6.68%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-9	-2.221e+01	0.0000	976.0	25.58%	486.4	21.36%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-9	-2.173e+01	0.0000	974.0	25.53%	487.0	21.38%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-9	-2.142e+01	0.0000	311.0	8.15%	130.9	5.75%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-9	-2.107e+01	0.0000	53.0	1.39%	12.4	0.54%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-8	-2.062e+01	0.0000	267.0	7.00%	109.3	4.80%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-8	-2.010e+01	0.0000	68.0	1.78%	18.2	0.80%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-8	-1.945e+01	0.0000	178.0	4.67%	67.1	2.95%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-7	-1.827e+01	0.0000	26.0	0.68%	4.1	0.18%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-7	-1.759e+01	0.0000	399.0	10.46%	181.6	7.97%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-6	-1.576e+01	0.0000	166.0	4.35%	65.5	2.88%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-6	-1.556e+01	0.0000	24.0	0.63%	4.9	0.22%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-6	-1.535e+01	0.0000	12.0	0.31%	1.5	0.06%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-6	-1.511e+01	0.0000	532.0	13.94%	257.3	11.30%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-6	-1.463e+01	0.0000	149.0	3.91%	58.9	2.58%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-6	-1.427e+01	0.0000	23.0	0.60%	4.5	0.20%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-6	-1.427e+01	0.0000	23.0	0.60%	4.9	0.21%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-6	-1.417e+01	0.0000	97.0	2.54%	34.9	1.53%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-6	-1.398e+01	0.0000	687.0	18.01%	345.5	15.17%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-6	-1.388e+01	0.0000	40.0	1.05%	11.0	0.48%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-5	-1.347e+01	0.0000	78.0	2.04%	26.3	1.16%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-5	-1.259e+01	0.0000	130.0	3.41%	51.1	2.24%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-5	-1.242e+01	0.0000	486.0	12.74%	238.6	10.48%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-5	-1.223e+01	0.0000	567.0	14.86%	283.9	12.47%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-5	-1.207e+01	0.0000	43.0	1.13%	12.0	0.53%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-5	-1.206e+01	0.0000	108.0	2.83%	41.4	1.82%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-5	-1.192e+01	0.0000	114.0	2.99%	44.3	1.95%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-5	-1.180e+01	0.0000	21.0	0.55%	4.3	0.19%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-4	-1.139e+01	0.0000	47.0	1.23%	14.4	0.63%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-4	-1.136e+01	0.0000	1162.0	30.46%	623.2	27.37%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-4	-1.127e+01	0.0000	243.0	6.37%	110.0	4.83%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-4	-1.047e+01	0.0001	75.0	1.97%	27.3	1.20%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-4	-1.030e+01	0.0001	365.0	9.57%	177.4	7.79%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-4	-1.009e+01	0.0001	441.0	11.56%	219.0	9.62%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-4	-9.879e+00	0.0001	63.0	1.65%	22.7	1.00%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-4	-9.642e+00	0.0001	135.0	3.54%	57.9	2.54%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-4	-9.518e+00	0.0001	19.0	0.50%	4.8	0.21%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-4	-9.518e+00	0.0001	19.0	0.50%	4.4	0.19%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-4	-9.325e+00	0.0002	146.0	3.83%	63.5	2.79%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-4	-9.257e+00	0.0002	116.0	3.04%	48.6	2.14%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-4	-9.252e+00	0.0002	980.0	25.69%	526.7	23.13%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-4	-9.234e+00	0.0002	307.0	8.05%	148.4	6.52%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-8.957e+00	0.0002	235.0	6.16%	110.1	4.83%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-3	-8.925e+00	0.0002	233.0	6.11%	109.8	4.82%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-3	-8.465e+00	0.0004	184.0	4.82%	84.9	3.73%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-3	-8.132e+00	0.0005	91.0	2.39%	37.4	1.64%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-3	-8.076e+00	0.0006	23.0	0.60%	6.8	0.30%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-3	-8.040e+00	0.0006	752.0	19.71%	400.2	17.58%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-3	-7.626e+00	0.0009	25.0	0.66%	7.6	0.33%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-3	-7.603e+00	0.0009	48.0	1.26%	17.1	0.75%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-3	-7.430e+00	0.0010	17.0	0.45%	4.5	0.20%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-3	-7.385e+00	0.0011	41.0	1.07%	14.4	0.63%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-3	-7.356e+00	0.0011	107.0	2.80%	46.1	2.02%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-3	-7.350e+00	0.0011	81.0	2.12%	33.7	1.48%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-3	-7.256e+00	0.0012	43.0	1.13%	15.2	0.67%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-6.837e+00	0.0018	367.0	9.62%	187.7	8.24%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-6.817e+00	0.0018	146.0	3.83%	67.9	2.98%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-6.510e+00	0.0025	1296.0	33.97%	723.0	31.75%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-6.373e+00	0.0028	110.0	2.88%	49.5	2.17%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-6.219e+00	0.0033	159.0	4.17%	75.3	3.31%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-2	-5.970e+00	0.0042	18.0	0.47%	5.4	0.24%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-2	-5.559e+00	0.0063	42.0	1.10%	16.5	0.73%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-5.322e+00	0.0079	337.0	8.83%	175.9	7.72%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-2	-4.894e+00	0.0120	19.0	0.50%	6.0	0.27%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-2	-4.863e+00	0.0123	86.0	2.25%	40.0	1.76%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-2	-4.777e+00	0.0134	228.0	5.98%	116.6	5.12%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-4.582e+00	0.0161	145.0	3.80%	71.3	3.13%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-4.565e+00	0.0163	327.0	8.57%	172.6	7.58%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-4.498e+00	0.0173	128.0	3.36%	62.7	2.75%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-4.410e+00	0.0188	16.0	0.42%	5.6	0.24%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-4.394e+00	0.0190	1331.0	34.89%	755.5	33.18%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-4.261e+00	0.0215	657.0	17.22%	362.7	15.93%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-4.245e+00	0.0218	180.0	4.72%	91.5	4.02%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-4.229e+00	0.0220	284.0	7.44%	149.9	6.58%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-3.986e+00	0.0278	124.0	3.25%	61.3	2.69%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.914e+00	0.0298	142.0	3.72%	71.6	3.14%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-3.874e+00	0.0308	340.0	8.91%	182.4	8.01%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-3.846e+00	0.0315	8.0	0.21%	2.7	0.12%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-1	-3.798e+00	0.0328	502.0	13.16%	275.9	12.11%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-3.390e+00	0.0491	79.0	2.07%	38.5	1.69%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-1	-3.300e+00	0.0533	157.0	4.12%	81.5	3.58%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-3.136e+00	0.0625	48.0	1.26%	22.7	1.00%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.069e+00	0.0664	170.0	4.46%	89.0	3.91%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-3.020e+00	0.0694	159.0	4.17%	83.1	3.65%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-2.999e+00	0.0704	38.0	1.00%	17.9	0.79%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-2.913e+00	0.0759	7.0	0.18%	2.8	0.12%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.913e+00	0.0759	7.0	0.18%	2.2	0.10%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-2.587e+00	0.1045	274.0	7.18%	150.8	6.62%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-2.453e+00	0.1189	238.0	6.24%	130.6	5.73%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.280e+00	0.1405	142.0	3.72%	76.7	3.37%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.190e+00	0.1529	90.0	2.36%	47.7	2.10%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.189e+00	0.1529	180.0	4.72%	98.8	4.34%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.099e+00	0.1656	59.0	1.55%	30.2	1.33%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.968e+00	0.1878	565.0	14.81%	323.5	14.21%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.662e+00	0.2537	48.0	1.26%	25.0	1.10%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.607e+00	0.2665	37.0	0.97%	19.1	0.84%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.475e+00	0.3027	136.0	3.56%	76.6	3.36%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.401e+00	0.3240	106.0	2.78%	59.8	2.63%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.060e+00	0.4536	62.0	1.63%	35.2	1.55%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-9.341e-01	0.5114	13.0	0.34%	7.6	0.33%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-8.931e-01	0.5301	42.0	1.10%	24.4	1.07%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.341e-01	0.5593	28.0	0.73%	16.4	0.72%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-8.042e-01	0.5733	719.0	18.85%	427.7	18.78%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-7.653e-01	0.5929	169.0	4.43%	100.0	4.39%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-7.165e-01	0.6194	180.0	4.72%	107.4	4.72%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-7.089e-01	0.6209	91.0	2.39%	54.6	2.40%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-6.949e-01	0.6265	2.0	0.05%	1.0	0.05%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.714e-01	0.6381	27.0	0.71%	16.2	0.71%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-6.648e-01	0.6391	1194.0	31.30%	713.4	31.33%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.549e-01	0.6422	82.0	2.15%	49.6	2.18%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.245e-01	0.6587	110.0	2.88%	66.1	2.90%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.773e-01	0.7593	620.0	16.25%	374.3	16.44%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-4.691e-01	0.7618	553.0	14.50%	334.3	14.68%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.677e-01	0.7618	139.0	3.64%	85.9	3.77%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-4.505e-01	0.7685	669.0	17.54%	404.9	17.78%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-4.430e-01	0.7705	364.0	9.54%	221.8	9.74%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-4.226e-01	0.7826	148.0	3.88%	91.6	4.02%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-4.158e-01	0.7841	6.0	0.16%	4.5	0.20%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-3.916e-01	0.7994	210.0	5.50%	129.9	5.70%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.438e-01	0.8346	50.0	1.31%	32.9	1.44%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.105e-01	0.8587	24.0	0.63%	16.5	0.73%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.712e-01	0.8889	561.0	14.71%	344.4	15.13%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.283e-01	0.9236	940.0	24.64%	574.6	25.23%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.240e-01	0.9236	757.0	19.84%	464.6	20.40%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.144e-01	0.9277	70.0	1.83%	46.6	2.04%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.120e-01	0.9277	43.0	1.13%	29.5	1.30%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.072e-01	0.9277	1.0	0.03%	1.1	0.05%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.072e-01	0.9277	1.0	0.03%	0.2	0.01%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.041e-01	0.9277	681.0	17.85%	419.4	18.42%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.858e-01	0.9328	559.0	14.65%	346.9	15.23%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.836e-01	0.9328	211.0	5.53%	134.7	5.92%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.748e-01	0.9346	36.0	0.94%	25.7	1.13%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.512e-01	0.9526	10.0	0.26%	8.4	0.37%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-1.392e-01	0.9598	109.0	2.86%	72.0	3.16%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.012e-01	0.9926	123.0	3.22%	82.6	3.63%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-9.824e-02	0.9926	126.0	3.30%	84.4	3.71%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.655e-02	0.9938	16.0	0.42%	13.2	0.58%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.655e-02	0.9938	16.0	0.42%	13.2	0.58%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-7.494e-02	1.0000	62.0	1.63%	44.3	1.95%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-6.665e-02	1.0000	60.0	1.57%	43.9	1.93%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.577e-02	1.0000	24.0	0.63%	19.0	0.84%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-6.009e-02	1.0000	52.0	1.36%	38.5	1.69%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.953e-02	1.0000	68.0	1.78%	50.0	2.20%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.517e-02	1.0000	191.0	5.01%	128.6	5.65%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.862e-02	1.0000	679.0	17.80%	435.2	19.11%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.789e-02	1.0000	102.0	2.67%	74.7	3.28%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.249e-02	1.0000	93.0	2.44%	69.2	3.04%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.079e-02	1.0000	76.0	1.99%	58.4	2.57%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-5.806e-03	1.0000	654.0	17.14%	426.5	18.73%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.178e-03	1.0000	90.0	2.36%	71.5	3.14%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.995e-03	1.0000	636.0	16.67%	421.0	18.49%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.125e-03	1.0000	107.0	2.80%	84.0	3.69%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.220e-04	1.0000	29.0	0.76%	30.5	1.34%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.100e-05	1.0000	395.0	10.35%	281.5	12.36%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.200e-05	1.0000	58.0	1.52%	57.2	2.51%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	1397.0	36.62%	947.1	41.59%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-0.000e+00	1.0000	38.0	1.00%	55.2	2.43%