Information for motif1


Reverse Opposite:

p-value:1e-134
log p-value:-3.095e+02
Information Content per bp:1.664
Number of Target Sequences with motif339.0
Percentage of Target Sequences with motif8.89%
Number of Background Sequences with motif753.5
Percentage of Background Sequences with motif1.65%
Average Position of motif in Targets101.9 +/- 52.5bp
Average Position of motif in Background101.8 +/- 59.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0046.1_HNF1A/Jaspar

Match Rank:1
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---AATGATTAAC-
GNTAATNATTAACC

MA0153.1_HNF1B/Jaspar

Match Rank:2
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--AATGATTAAC
TTAATATTTAAC

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:3
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--AATGATTAAC-
TTAATGTTTAACC

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AATGATTAAC
AATAATT---

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:AATGATTAAC
--YCATTAMC

PH0051.1_Hoxa4/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AATGATTAAC---
GATTATTAATTAACTTG

PH0019.1_Dbx2/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AATGATTAAC----
NAATTAATTAATTNNN

PH0059.1_Hoxb4/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----AATGATTAAC---
GNTNATTAATTAACNNG

PH0173.1_Uncx/Jaspar

Match Rank:9
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----AATGATTAAC---
CATAATTAATTAACGCG

PH0054.1_Hoxa7_1/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----AATGATTAAC---
GNNNATTAATTAANNCG