Information for motif19


Reverse Opposite:

p-value:1e-6
log p-value:-1.511e+01
Information Content per bp:1.788
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets89.5 +/- 42.3bp
Average Position of motif in Background80.5 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGTAGTATACTA---
TATAATTATAATATTC

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CGTAGTATACTA---
NCGTATTATAATCNTA

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CGTAGTATACTA--
--NDGTAAACARRN

PB0081.1_Tcf1_1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CGTAGTATACTA----
ACTTAGTTAACTAAAAA

PB0016.1_Foxj1_1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CGTAGTATACTA-----
-AAAGTAAACAAAAATT

PB0017.1_Foxj3_1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CGTAGTATACTA----
AAAAAGTAAACAAACAC

MA0593.1_FOXP2/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGTAGTATACTA-
--AAGTAAACAAA

PH0168.1_Hnf1b/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CGTAGTATACTA-----
AGCTGTTAACTAGCCGT

PB0015.1_Foxa2_1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CGTAGTATACTA----
AAAAAGTAAACAAAGAC

PB0106.1_Arid5a_2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CGTAGTATACTA-----
CATACAATACGAAATAA