Information for motif6


Reverse Opposite:

p-value:1e-65
log p-value:-1.509e+02
Information Content per bp:1.672
Number of Target Sequences with motif302.0
Percentage of Target Sequences with motif7.92%
Number of Background Sequences with motif1143.2
Percentage of Background Sequences with motif2.50%
Average Position of motif in Targets97.5 +/- 52.9bp
Average Position of motif in Background97.2 +/- 55.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0484.1_HNF4G/Jaspar

Match Rank:1
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:TGVMCTTTGACC---
TGGACTTTGNNCTCN

MA0114.2_HNF4A/Jaspar

Match Rank:2
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-TGVMCTTTGACC--
CTGGACTTTGGACTC

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:TGVMCTTTGACC----
TGGACTTTGNNCTNTG

MA0017.1_NR2F1/Jaspar

Match Rank:4
Score:0.90
Offset:0
Orientation:forward strand
Alignment:TGVMCTTTGACC--
TGACCTTTGAACCT

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:TGVMCTTTGACC--
TGACCTTTGACCTC

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:6
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TGVMCTTTGACC---
TGACCTTTGCCCTAN

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.87
Offset:0
Orientation:forward strand
Alignment:TGVMCTTTGACC--
TGACCTTTGCCCCA

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TGVMCTTTGACC--
TGACCTTTGCCCTA

MA0504.1_NR2C2/Jaspar

Match Rank:9
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:TGVMCTTTGACC---
TGACCTCTGACCCCN

MA0115.1_NR1H2::RXRA/Jaspar

Match Rank:10
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TGVMCTTTGACC---
GTTGACCTTTGACCTTT