Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 10557)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 8464)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-481	-1.109e+03	0.0000	2483.0	23.52%	709.3	8.38%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-443	-1.022e+03	0.0000	2102.0	19.91%	560.3	6.62%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-429	-9.888e+02	0.0000	1946.0	18.43%	500.2	5.91%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-345	-7.947e+02	0.0000	848.0	8.03%	121.3	1.43%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-324	-7.467e+02	0.0000	738.0	6.99%	96.5	1.14%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-276	-6.374e+02	0.0000	2153.0	20.39%	764.6	9.03%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-237	-5.467e+02	0.0000	974.0	9.23%	225.8	2.67%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-165	-3.807e+02	0.0000	1487.0	14.08%	554.1	6.54%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-155	-3.581e+02	0.0000	3161.0	29.94%	1620.7	19.14%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-131	-3.030e+02	0.0000	2807.0	26.59%	1445.1	17.07%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-126	-2.903e+02	0.0000	2128.0	20.16%	1013.5	11.97%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-117	-2.713e+02	0.0000	1531.0	14.50%	661.9	7.82%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-114	-2.646e+02	0.0000	4546.0	43.06%	2744.5	32.42%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-98	-2.262e+02	0.0000	2946.0	27.90%	1642.7	19.40%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-86	-2.002e+02	0.0000	1624.0	15.38%	788.6	9.31%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-83	-1.928e+02	0.0000	1418.0	13.43%	666.8	7.88%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-74	-1.704e+02	0.0000	1010.0	9.57%	439.1	5.19%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-67	-1.554e+02	0.0000	1910.0	18.09%	1033.5	12.21%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-64	-1.497e+02	0.0000	916.0	8.68%	402.8	4.76%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-64	-1.486e+02	0.0000	2432.0	23.03%	1404.5	16.59%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-61	-1.414e+02	0.0000	4737.0	44.87%	3130.7	36.98%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-57	-1.326e+02	0.0000	2891.0	27.38%	1762.7	20.82%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-51	-1.195e+02	0.0000	1971.0	18.67%	1132.6	13.38%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-51	-1.187e+02	0.0000	1255.0	11.89%	649.0	7.67%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-49	-1.130e+02	0.0000	2292.0	21.71%	1370.5	16.19%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-46	-1.059e+02	0.0000	1575.0	14.92%	882.7	10.43%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-45	-1.039e+02	0.0000	562.0	5.32%	235.1	2.78%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-44	-1.019e+02	0.0000	5810.0	55.03%	4081.6	48.21%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-43	-1.006e+02	0.0000	1812.0	17.16%	1055.7	12.47%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-40	-9.425e+01	0.0000	3632.0	34.40%	2402.9	28.38%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-40	-9.217e+01	0.0000	2229.0	21.11%	1368.4	16.16%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-37	-8.527e+01	0.0000	414.0	3.92%	167.0	1.97%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-32	-7.423e+01	0.0000	1573.0	14.90%	939.7	11.10%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-30	-6.921e+01	0.0000	615.0	5.82%	302.9	3.58%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-26	-6.109e+01	0.0000	2008.0	19.02%	1282.2	15.14%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-26	-5.994e+01	0.0000	371.0	3.51%	163.6	1.93%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-24	-5.736e+01	0.0000	1754.0	16.61%	1107.1	13.08%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-24	-5.610e+01	0.0000	1040.0	9.85%	604.5	7.14%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-23	-5.422e+01	0.0000	321.0	3.04%	139.5	1.65%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-21	-4.946e+01	0.0000	4568.0	43.27%	3274.5	38.68%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-21	-4.895e+01	0.0000	183.0	1.73%	66.6	0.79%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-20	-4.614e+01	0.0000	508.0	4.81%	264.2	3.12%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-18	-4.325e+01	0.0000	157.0	1.49%	56.3	0.67%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-18	-4.289e+01	0.0000	1187.0	11.24%	736.3	8.70%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-17	-4.040e+01	0.0000	894.0	8.47%	535.8	6.33%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-16	-3.869e+01	0.0000	168.0	1.59%	65.6	0.77%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-16	-3.850e+01	0.0000	674.0	6.38%	387.5	4.58%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-15	-3.489e+01	0.0000	299.0	2.83%	146.2	1.73%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-14	-3.443e+01	0.0000	1127.0	10.67%	716.0	8.46%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-14	-3.403e+01	0.0000	1891.0	17.91%	1278.0	15.10%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-14	-3.346e+01	0.0000	1931.0	18.29%	1310.1	15.47%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-14	-3.226e+01	0.0000	2299.0	21.77%	1592.7	18.81%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-13	-3.217e+01	0.0000	37.0	0.35%	6.7	0.08%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-13	-3.212e+01	0.0000	350.0	3.32%	182.1	2.15%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-13	-3.011e+01	0.0000	405.0	3.84%	221.2	2.61%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-12	-2.986e+01	0.0000	136.0	1.29%	54.3	0.64%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-12	-2.823e+01	0.0000	177.0	1.68%	79.5	0.94%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-12	-2.806e+01	0.0000	1074.0	10.17%	695.1	8.21%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-12	-2.771e+01	0.0000	1174.0	11.12%	769.4	9.09%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-11	-2.749e+01	0.0000	1435.0	13.59%	962.8	11.37%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-11	-2.718e+01	0.0000	42.0	0.40%	9.9	0.12%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-11	-2.713e+01	0.0000	1640.0	15.53%	1116.3	13.19%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-11	-2.689e+01	0.0000	1455.0	13.78%	979.9	11.57%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-10	-2.352e+01	0.0000	278.0	2.63%	148.8	1.76%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-9	-2.302e+01	0.0000	624.0	5.91%	386.7	4.57%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-9	-2.284e+01	0.0000	69.0	0.65%	23.1	0.27%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-9	-2.248e+01	0.0000	167.0	1.58%	80.0	0.94%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-9	-2.167e+01	0.0000	1231.0	11.66%	832.8	9.84%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-9	-2.135e+01	0.0000	2297.0	21.76%	1640.6	19.38%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-8	-1.888e+01	0.0000	798.0	7.56%	523.8	6.19%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-8	-1.871e+01	0.0000	42.0	0.40%	12.9	0.15%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-7	-1.817e+01	0.0000	290.0	2.75%	165.1	1.95%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-7	-1.795e+01	0.0000	282.0	2.67%	160.8	1.90%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-7	-1.794e+01	0.0000	163.0	1.54%	82.4	0.97%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-7	-1.743e+01	0.0000	310.0	2.94%	180.6	2.13%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-7	-1.680e+01	0.0000	501.0	4.75%	315.7	3.73%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-7	-1.665e+01	0.0000	56.0	0.53%	20.0	0.24%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-7	-1.656e+01	0.0000	1397.0	13.23%	978.7	11.56%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-6	-1.604e+01	0.0000	801.0	7.59%	535.8	6.33%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-6	-1.451e+01	0.0000	735.0	6.96%	492.4	5.82%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-6	-1.415e+01	0.0000	561.0	5.31%	366.6	4.33%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-6	-1.414e+01	0.0000	101.0	0.96%	48.8	0.58%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-6	-1.413e+01	0.0000	771.0	7.30%	520.6	6.15%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-5	-1.351e+01	0.0000	2411.0	22.84%	1774.3	20.96%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-5	-1.318e+01	0.0000	1165.0	11.03%	819.3	9.68%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-5	-1.317e+01	0.0000	71.0	0.67%	31.4	0.37%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-5	-1.291e+01	0.0000	2443.0	23.14%	1803.4	21.30%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-5	-1.280e+01	0.0000	271.0	2.57%	163.3	1.93%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-5	-1.219e+01	0.0000	110.0	1.04%	56.1	0.66%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-5	-1.194e+01	0.0000	79.0	0.75%	37.3	0.44%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-5	-1.153e+01	0.0000	193.0	1.83%	112.3	1.33%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-4	-1.110e+01	0.0000	333.0	3.15%	211.5	2.50%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-4	-1.082e+01	0.0001	277.0	2.62%	172.9	2.04%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-4	-1.054e+01	0.0001	1019.0	9.65%	722.0	8.53%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-4	-1.040e+01	0.0001	81.0	0.77%	40.6	0.48%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-4	-1.038e+01	0.0001	601.0	5.69%	409.3	4.83%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-4	-1.009e+01	0.0001	365.0	3.46%	237.6	2.81%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-3	-8.903e+00	0.0003	372.0	3.52%	246.5	2.91%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-3	-8.773e+00	0.0004	220.0	2.08%	137.7	1.63%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-3	-8.702e+00	0.0004	177.0	1.68%	107.4	1.27%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-3	-8.593e+00	0.0005	274.0	2.60%	176.3	2.08%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-8.589e+00	0.0005	802.0	7.60%	568.3	6.71%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-3	-8.541e+00	0.0005	336.0	3.18%	221.9	2.62%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-3	-8.459e+00	0.0005	1595.0	15.11%	1177.7	13.91%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-3	-8.406e+00	0.0005	334.0	3.16%	220.9	2.61%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-3	-8.309e+00	0.0006	637.0	6.03%	445.6	5.26%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-3	-8.239e+00	0.0006	151.0	1.43%	90.1	1.06%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-3	-8.157e+00	0.0007	1672.0	15.84%	1239.4	14.64%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-3	-7.995e+00	0.0008	623.0	5.90%	436.1	5.15%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-3	-7.792e+00	0.0009	1295.0	12.27%	950.4	11.23%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-3	-7.666e+00	0.0010	1039.0	9.84%	754.8	8.92%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-3	-7.582e+00	0.0011	3259.0	30.87%	2489.2	29.40%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-3	-7.503e+00	0.0012	81.0	0.77%	44.1	0.52%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-3	-7.062e+00	0.0018	212.0	2.01%	136.2	1.61%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-3	-7.062e+00	0.0018	212.0	2.01%	136.1	1.61%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-7.045e+00	0.0018	537.0	5.09%	376.6	4.45%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-2	-6.843e+00	0.0022	2351.0	22.27%	1781.2	21.04%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-6.713e+00	0.0025	205.0	1.94%	133.0	1.57%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-6.654e+00	0.0027	635.0	6.01%	452.4	5.34%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-2	-6.547e+00	0.0029	364.0	3.45%	249.2	2.94%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-2	-6.507e+00	0.0030	68.0	0.64%	37.3	0.44%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-6.502e+00	0.0030	1267.0	12.00%	938.1	11.08%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-6.363e+00	0.0034	840.0	7.96%	610.4	7.21%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-6.165e+00	0.0042	88.0	0.83%	51.0	0.60%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-5.900e+00	0.0054	459.0	4.35%	323.3	3.82%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-2	-5.832e+00	0.0057	140.0	1.33%	88.1	1.04%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-5.690e+00	0.0065	629.0	5.96%	453.3	5.35%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-5.490e+00	0.0079	64.0	0.61%	37.0	0.44%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-5.145e+00	0.0111	247.0	2.34%	168.8	1.99%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-4.933e+00	0.0136	443.0	4.20%	316.7	3.74%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-2	-4.919e+00	0.0137	100.0	0.95%	62.8	0.74%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-4.754e+00	0.0161	443.0	4.20%	317.9	3.75%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-2	-4.725e+00	0.0164	317.0	3.00%	222.9	2.63%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-2	-4.707e+00	0.0166	5.0	0.05%	1.3	0.02%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-2	-4.706e+00	0.0166	3063.0	29.01%	2368.9	27.98%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-4.551e+00	0.0191	473.0	4.48%	341.8	4.04%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-4.542e+00	0.0191	757.0	7.17%	559.8	6.61%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-4.299e+00	0.0242	1648.0	15.61%	1256.3	14.84%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-4.282e+00	0.0244	187.0	1.77%	128.0	1.51%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-4.220e+00	0.0258	897.0	8.50%	670.5	7.92%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-4.167e+00	0.0270	543.0	5.14%	397.4	4.69%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-4.060e+00	0.0299	452.0	4.28%	328.7	3.88%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-3.783e+00	0.0392	771.0	7.30%	576.8	6.81%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.675e+00	0.0433	94.0	0.89%	61.0	0.72%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.523e+00	0.0501	57.0	0.54%	35.8	0.42%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-3.501e+00	0.0508	44.0	0.42%	26.8	0.32%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-3.368e+00	0.0577	494.0	4.68%	365.5	4.32%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-1	-3.351e+00	0.0582	685.0	6.49%	513.6	6.07%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-3.341e+00	0.0584	508.0	4.81%	376.9	4.45%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.326e+00	0.0589	1235.0	11.70%	943.0	11.14%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.900e+00	0.0897	546.0	5.17%	409.3	4.84%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-2.870e+00	0.0917	59.0	0.56%	38.8	0.46%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.834e+00	0.0945	367.0	3.48%	271.1	3.20%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-2.819e+00	0.0953	42.0	0.40%	26.2	0.31%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-2.670e+00	0.1099	687.0	6.51%	521.2	6.16%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-1	-2.528e+00	0.1259	70.0	0.66%	47.7	0.56%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-2.479e+00	0.1313	171.0	1.62%	124.0	1.46%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.408e+00	0.1401	181.0	1.71%	131.1	1.55%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.281e+00	0.1581	109.0	1.03%	77.5	0.91%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.208e+00	0.1690	26.0	0.25%	16.7	0.20%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-2.166e+00	0.1751	107.0	1.01%	76.2	0.90%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.050e+00	0.1955	17.0	0.16%	10.2	0.12%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.038e+00	0.1967	1070.0	10.13%	830.9	9.81%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.010e+00	0.2010	498.0	4.72%	380.3	4.49%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.980e+00	0.2058	119.0	1.13%	86.3	1.02%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.916e+00	0.2181	2028.0	19.21%	1592.8	18.81%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.900e+00	0.2204	550.0	5.21%	422.8	4.99%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.874e+00	0.2247	1754.0	16.61%	1375.0	16.24%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.869e+00	0.2247	130.0	1.23%	95.7	1.13%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.596e+00	0.2933	539.0	5.11%	417.6	4.93%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.521e+00	0.3142	369.0	3.49%	284.1	3.36%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.515e+00	0.3143	104.0	0.99%	77.8	0.92%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.432e+00	0.3397	124.0	1.17%	93.4	1.10%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.424e+00	0.3404	257.0	2.43%	197.0	2.33%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.401e+00	0.3462	272.0	2.58%	209.7	2.48%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.390e+00	0.3482	376.0	3.56%	291.9	3.45%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.342e+00	0.3633	355.0	3.36%	275.0	3.25%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.259e+00	0.3922	53.0	0.50%	39.9	0.47%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.190e+00	0.4180	254.0	2.41%	197.4	2.33%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.168e+00	0.4249	481.0	4.56%	377.5	4.46%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.124e+00	0.4415	315.0	2.98%	246.3	2.91%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.086e+00	0.4564	327.0	3.10%	256.9	3.03%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.043e+00	0.4736	427.0	4.04%	336.4	3.97%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-9.996e-01	0.4920	318.0	3.01%	251.0	2.96%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-9.900e-01	0.4941	207.0	1.96%	162.3	1.92%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-9.877e-01	0.4941	135.0	1.28%	105.4	1.24%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-9.199e-01	0.5243	138.0	1.31%	108.5	1.28%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-8.803e-01	0.5426	952.0	9.02%	758.3	8.96%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-8.552e-01	0.5534	264.0	2.50%	209.6	2.48%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-8.245e-01	0.5677	435.0	4.12%	347.0	4.10%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-8.156e-01	0.5698	391.0	3.70%	312.0	3.68%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-8.141e-01	0.5698	1552.0	14.70%	1240.7	14.65%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-7.814e-01	0.5835	990.0	9.38%	791.8	9.35%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-7.614e-01	0.5922	496.0	4.70%	396.1	4.68%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-7.337e-01	0.6057	1742.0	16.50%	1395.5	16.48%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-7.024e-01	0.6218	220.0	2.08%	176.4	2.08%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-7.011e-01	0.6218	74.0	0.70%	59.8	0.71%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-6.975e-01	0.6218	54.0	0.51%	43.5	0.51%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-6.625e-01	0.6373	1973.0	18.69%	1583.3	18.70%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.277e-01	0.6566	648.0	6.14%	521.6	6.16%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.908e-01	0.6779	100.0	0.95%	81.5	0.96%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.820e-01	0.6805	142.0	1.34%	115.6	1.37%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.483e-01	0.7004	336.0	3.18%	272.7	3.22%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-5.463e-01	0.7004	434.0	4.11%	351.2	4.15%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-5.435e-01	0.7004	496.0	4.70%	401.2	4.74%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.256e-01	0.7060	12.0	0.11%	10.7	0.13%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-5.221e-01	0.7060	1272.0	12.05%	1026.1	12.12%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-5.050e-01	0.7137	68.0	0.64%	56.0	0.66%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-5.024e-01	0.7137	148.0	1.40%	121.8	1.44%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.861e-01	0.7204	416.0	3.94%	338.1	3.99%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.708e-01	0.7281	1682.0	15.93%	1358.6	16.05%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.297e-01	0.7551	819.0	7.76%	665.7	7.86%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-3.908e-01	0.7813	41.0	0.39%	35.8	0.42%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.671e-01	0.7963	199.0	1.88%	165.3	1.95%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.603e-01	0.7981	361.0	3.42%	297.5	3.51%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.580e-01	0.7981	37.0	0.35%	32.6	0.38%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.577e-01	0.7981	1508.0	14.28%	1224.5	14.46%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.142e-01	0.8242	40.0	0.38%	35.5	0.42%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-2.830e-01	0.8464	36.0	0.34%	32.1	0.38%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.031e-01	0.9126	108.0	1.02%	94.8	1.12%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.975e-01	0.9136	13.0	0.12%	13.5	0.16%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.701e-01	0.9348	420.0	3.98%	353.1	4.17%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.427e-01	0.9564	151.0	1.43%	132.3	1.56%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.216e-01	0.9724	489.0	4.63%	413.5	4.88%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.163e-01	0.9733	14.0	0.13%	15.9	0.19%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.102e-01	0.9749	246.0	2.33%	213.8	2.53%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.072e-01	0.9749	37.0	0.35%	36.3	0.43%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-1.020e-01	0.9749	98.0	0.93%	89.2	1.05%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-8.762e-02	0.9841	392.0	3.71%	336.5	3.97%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-8.614e-02	0.9841	638.0	6.04%	539.9	6.38%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-7.866e-02	0.9844	192.0	1.82%	170.1	2.01%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.307e-02	0.9844	72.0	0.68%	68.8	0.81%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.307e-02	0.9844	72.0	0.68%	68.8	0.81%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.033e-02	0.9897	687.0	6.51%	583.6	6.89%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.953e-02	1.0000	218.0	2.06%	196.8	2.32%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.146e-02	1.0000	165.0	1.56%	152.7	1.80%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-2.701e-02	1.0000	472.0	4.47%	412.7	4.87%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-1.054e-02	1.0000	4.0	0.04%	8.1	0.10%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.651e-03	1.0000	666.0	6.31%	586.3	6.92%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.660e-04	1.0000	217.0	2.06%	219.2	2.59%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-6.000e-05	1.0000	2142.0	20.29%	1847.0	21.82%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.000e-06	1.0000	4129.0	39.11%	3485.0	41.16%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.000e-06	1.0000	341.0	3.23%	349.5	4.13%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-0.000e+00	1.0000	78.0	0.74%	104.5	1.23%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	114.0	1.08%	141.1	1.67%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	20.0	0.19%	43.8	0.52%