Information for motif12


Reverse Opposite:

p-value:1e-24
log p-value:-5.599e+01
Information Content per bp:1.509
Number of Target Sequences with motif270.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif499.0
Percentage of Background Sequences with motif1.28%
Average Position of motif in Targets99.2 +/- 51.9bp
Average Position of motif in Background95.0 +/- 55.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TRAWYGGCTK--
TGATTGGCTANN

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TRAWYGGCTK--
ACTATGAATGAATGAT

Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TRAWYGGCTK-
GTAATCDGATTA

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TRAWYGGCTK
CCGATTGGCT-

MA0502.1_NFYB/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TRAWYGGCTK----
CTGATTGGTCNATTT

PH0005.1_Barhl1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TRAWYGGCTK--
GNNTTAATTGGTTGTT

MA0468.1_DUX4/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TRAWYGGCTK-
TGATTAAATTA

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TRAWYGGCTK
GTTAATGGCC--

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TRAWYGGCTK-
YTAATYNRATTA

PH0126.1_Obox6/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TRAWYGGCTK----
AAAAACGGATTATTG