Information for motif21


Reverse Opposite:

p-value:1e-13
log p-value:-3.104e+01
Information Content per bp:1.828
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets105.4 +/- 54.1bp
Average Position of motif in Background154.2 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0467.1_Crx/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CAGTAGATTAAB
AAGAGGATTAG-

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CAGTAGATTAAB
----GGATTAGC

PH0129.1_Otx1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAGTAGATTAAB----
AGAGGGGATTAATTTAT

PH0138.1_Pitx2/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAGTAGATTAAB----
TGAAGGGATTAATCATC

PH0126.1_Obox6/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAGTAGATTAAB-
AAAAACGGATTATTG

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAGTAGATTAAB
NNTGTGGATTSS-

PH0121.1_Obox1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAGTAGATTAAB---
TTAAGGGGATTAACTAC

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAGTAGATTAAB---
TGAGGGGGATTAACTAT

PH0035.1_Gsc/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGTAGATTAAB----
NNAAGGGATTAACGANT

PH0130.1_Otx2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGTAGATTAAB----
TGTAGGGATTAATTGTC