Information for motif24


Reverse Opposite:

p-value:1e-10
log p-value:-2.475e+01
Information Content per bp:1.977
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets93.4 +/- 45.6bp
Average Position of motif in Background115.2 +/- 40.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---TGCCATTGTA----
TGTTCCCATTGTGTACT

MA0077.1_SOX9/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TGCCATTGTA-
--CCATTGTTC

MA0143.3_Sox2/Jaspar

Match Rank:3
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TGCCATTGTA
--CCTTTGTT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TGCCATTGTA-
-NCCATTGTTC

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.73
Offset:2
Orientation:forward strand
Alignment:TGCCATTGTA
--CCWTTGTY

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TGCCATTGTA--
--CCATTGTTNY

MA0442.1_SOX10/Jaspar

Match Rank:7
Score:0.71
Offset:3
Orientation:forward strand
Alignment:TGCCATTGTA
---CTTTGT-

MA0515.1_Sox6/Jaspar

Match Rank:8
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TGCCATTGTA--
--CCATTGTTTT

PB0070.1_Sox30_1/Jaspar

Match Rank:9
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGCCATTGTA----
ANNTCCATTGTTCNNN

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGCCATTGTA----
NNNCCATTGTGTNAN