Information for motif27


Reverse Opposite:

p-value:1e-7
log p-value:-1.654e+01
Information Content per bp:1.530
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif12.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets95.0 +/- 58.8bp
Average Position of motif in Background74.0 +/- 54.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.70
Offset:4
Orientation:forward strand
Alignment:GTTGGCTCCC
----GCTCCG

MA0161.1_NFIC/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GTTGGCTCCC
-TTGGCA---

PB0112.1_E2F2_2/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTTGGCTCCC----
NNNNTTGGCGCCGANNN

PB0113.1_E2F3_2/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GTTGGCTCCC----
NNNNTTGGCGCCGANNN

PB0052.1_Plagl1_1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTTGGCTCCC----
TTGGGGGCGCCCCTAG

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GTTGGCTCCC-
NGTAGGTTGGCATNNN

MA0133.1_BRCA1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTTGGCTCCC
GTGTTGN-----

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GTTGGCTCCC
---NGCTN--

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GTTGGCTCCC
CCGATTGGCT---

MA0056.1_MZF1_1-4/Jaspar

Match Rank:10
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GTTGGCTCCC--
------TCCCCA