Information for motif29


Reverse Opposite:

p-value:1e-5
log p-value:-1.306e+01
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets100.6 +/- 47.4bp
Average Position of motif in Background40.2 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0130.1_ZNF354C/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TCCACATGAG
ATCCAC-----

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCCACATGAG
KCCACGTGAC

MA0104.3_Mycn/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCCACATGAG
GCCACGTG--

MA0147.2_Myc/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TCCACATGAG
AAGCACATGG-

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TCCACATGAG----
ATAACCACTTGAAAATT

MA0058.2_MAX/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TCCACATGAG
AAGCACATGG-

MA0479.1_FOXH1/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TCCACATGAG
TCCAATCCACA----

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCCACATGAG-
-TCACGTGACC

MA0526.1_USF2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TCCACATGAG
GGTCACATGAC

PH0114.1_Nkx2-5/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCCACATGAG---
TAAGCCACTTGAATTT