| p-value: | 1e-144 |
| log p-value: | -3.331e+02 |
| Information Content per bp: | 1.587 |
| Number of Target Sequences with motif | 2017.0 |
| Percentage of Target Sequences with motif | 19.10% |
| Number of Background Sequences with motif | 4157.0 |
| Percentage of Background Sequences with motif | 10.65% |
| Average Position of motif in Targets | 99.4 +/- 53.5bp |
| Average Position of motif in Background | 98.2 +/- 62.1bp |
| Strand Bias (log2 ratio + to - strand density) | -0.0 |
| Multiplicity (# of sites on avg that occur together) | 1.20 |
| Motif File: | file (matrix)
reverse opposite |
| PDF Format Logos: | forward logo
reverse opposite |
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer
| Match Rank: | 1 |
| Score: | 0.97
| | Offset: | 0
| | Orientation: | reverse strand |
| Alignment: | STAATTAGHH
YTAATTAVHT |
|
|
|
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer
| Match Rank: | 2 |
| Score: | 0.96
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -STAATTAGHH
NCTAATTA--- |
|
|
|
PB0031.1_Hoxa3_1/Jaspar
| Match Rank: | 3 |
| Score: | 0.93
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -STAATTAGHH---
GTTAATTANCTCNN |
|
|
|
PH0050.1_Hoxa3/Jaspar
| Match Rank: | 4 |
| Score: | 0.92
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -STAATTAGHH---
ACTAATTANCNCNA |
|
|
|
PH0133.1_Pax7/Jaspar
| Match Rank: | 5 |
| Score: | 0.91
| | Offset: | -5
| | Orientation: | reverse strand |
| Alignment: | -----STAATTAGHH--
NNNTNCTAATTAGNTCN |
|
|
|
PH0074.1_Hoxd1/Jaspar
| Match Rank: | 6 |
| Score: | 0.91
| | Offset: | -4
| | Orientation: | forward strand |
| Alignment: | ----STAATTAGHH---
TAAACTAATTAGCTGTA |
|
|
|
MA0132.1_Pdx1/Jaspar
| Match Rank: | 7 |
| Score: | 0.91
| | Offset: | 2
| | Orientation: | reverse strand |
| Alignment: | STAATTAGHH
--AATTAG-- |
|
|
|
MA0125.1_Nobox/Jaspar
| Match Rank: | 8 |
| Score: | 0.91
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -STAATTAGHH
ACCAATTA--- |
|
|
|
PH0160.1_Shox2/Jaspar
| Match Rank: | 9 |
| Score: | 0.90
| | Offset: | -4
| | Orientation: | forward strand |
| Alignment: | ----STAATTAGHH---
CGCGTTAATTAATTGTG |
|
|
|
PH0131.1_Pax4/Jaspar
| Match Rank: | 10 |
| Score: | 0.90
| | Offset: | -4
| | Orientation: | forward strand |
| Alignment: | ----STAATTAGHH---
TGAACTAATTAGCCCAC |
|
|
|
