Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 10561)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 39041)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-431	-9.937e+02	0.0000	2483.0	23.51%	3494.2	8.95%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-408	-9.395e+02	0.0000	2102.0	19.90%	2727.6	6.99%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-375	-8.649e+02	0.0000	1946.0	18.42%	2520.6	6.46%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-346	-7.975e+02	0.0000	738.0	6.99%	408.8	1.05%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-311	-7.170e+02	0.0000	848.0	8.03%	623.5	1.60%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-260	-6.008e+02	0.0000	2153.0	20.38%	3620.1	9.28%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-170	-3.933e+02	0.0000	974.0	9.22%	1299.7	3.33%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-160	-3.706e+02	0.0000	1487.0	14.08%	2583.5	6.62%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-140	-3.234e+02	0.0000	3161.0	29.93%	7653.5	19.61%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-116	-2.684e+02	0.0000	1531.0	14.50%	3057.7	7.84%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-115	-2.660e+02	0.0000	2128.0	20.15%	4786.3	12.27%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-105	-2.436e+02	0.0000	2807.0	26.58%	7006.0	17.95%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-92	-2.138e+02	0.0000	4546.0	43.04%	13050.8	33.45%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-89	-2.070e+02	0.0000	1418.0	13.43%	3002.9	7.70%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-88	-2.043e+02	0.0000	2946.0	27.89%	7718.7	19.78%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-87	-2.005e+02	0.0000	1624.0	15.38%	3629.5	9.30%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-79	-1.838e+02	0.0000	1010.0	9.56%	1969.9	5.05%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-78	-1.802e+02	0.0000	1910.0	18.08%	4601.9	11.79%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-75	-1.744e+02	0.0000	916.0	8.67%	1753.8	4.49%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-61	-1.411e+02	0.0000	2292.0	21.70%	6075.5	15.57%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-57	-1.320e+02	0.0000	1255.0	11.88%	2911.6	7.46%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-54	-1.260e+02	0.0000	2891.0	27.37%	8180.5	20.96%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-53	-1.239e+02	0.0000	562.0	5.32%	1011.0	2.59%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-49	-1.147e+02	0.0000	1971.0	18.66%	5254.2	13.47%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-44	-1.015e+02	0.0000	4737.0	44.85%	14893.5	38.17%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-42	-9.872e+01	0.0000	2432.0	23.03%	6912.8	17.72%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-42	-9.726e+01	0.0000	3633.0	34.40%	11033.9	28.28%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-38	-8.929e+01	0.0000	2229.0	21.10%	6332.2	16.23%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-38	-8.831e+01	0.0000	414.0	3.92%	754.0	1.93%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-37	-8.694e+01	0.0000	5811.0	55.02%	19015.9	48.73%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-31	-7.266e+01	0.0000	321.0	3.04%	571.5	1.46%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-31	-7.181e+01	0.0000	1575.0	14.91%	4356.1	11.16%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-30	-7.072e+01	0.0000	615.0	5.82%	1383.0	3.54%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-29	-6.777e+01	0.0000	4568.0	43.25%	14767.8	37.85%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-29	-6.735e+01	0.0000	1812.0	17.16%	5180.0	13.28%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-23	-5.336e+01	0.0000	1756.0	16.63%	5155.9	13.21%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-21	-5.046e+01	0.0000	371.0	3.51%	795.1	2.04%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-21	-5.008e+01	0.0000	2008.0	19.01%	6048.2	15.50%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-20	-4.784e+01	0.0000	1573.0	14.89%	4612.0	11.82%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-19	-4.588e+01	0.0000	1127.0	10.67%	3162.3	8.10%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-19	-4.452e+01	0.0000	508.0	4.81%	1227.4	3.15%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-18	-4.173e+01	0.0000	183.0	1.73%	327.0	0.84%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-16	-3.914e+01	0.0000	37.0	0.35%	22.0	0.06%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-16	-3.805e+01	0.0000	157.0	1.49%	274.8	0.70%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-15	-3.666e+01	0.0000	42.0	0.40%	32.0	0.08%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-15	-3.568e+01	0.0000	168.0	1.59%	310.0	0.79%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-15	-3.467e+01	0.0000	1455.0	13.78%	4390.0	11.25%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-14	-3.358e+01	0.0000	351.0	3.32%	832.9	2.13%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-14	-3.323e+01	0.0000	624.0	5.91%	1673.2	4.29%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-13	-3.153e+01	0.0000	1892.0	17.91%	5934.0	15.21%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-13	-3.121e+01	0.0000	177.0	1.68%	351.1	0.90%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-12	-2.960e+01	0.0000	167.0	1.58%	331.8	0.85%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-12	-2.897e+01	0.0000	1040.0	9.85%	3076.3	7.88%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-12	-2.819e+01	0.0000	299.0	2.83%	713.3	1.83%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-11	-2.681e+01	0.0000	2297.0	21.75%	7435.7	19.06%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-11	-2.658e+01	0.0000	136.0	1.29%	261.3	0.67%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-11	-2.606e+01	0.0000	42.0	0.40%	43.6	0.11%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-11	-2.601e+01	0.0000	278.0	2.63%	665.4	1.71%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-11	-2.594e+01	0.0000	1435.0	13.59%	4458.3	11.43%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-11	-2.561e+01	0.0000	894.0	8.46%	2635.2	6.75%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-10	-2.494e+01	0.0000	674.0	6.38%	1919.3	4.92%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-10	-2.305e+01	0.0000	79.0	0.75%	129.7	0.33%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-8	-1.966e+01	0.0000	1931.0	18.28%	6305.1	16.16%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-7	-1.732e+01	0.0000	405.0	3.83%	1133.7	2.91%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-7	-1.725e+01	0.0000	798.0	7.56%	2435.2	6.24%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-7	-1.693e+01	0.0000	502.0	4.75%	1453.7	3.73%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-6	-1.602e+01	0.0000	635.0	6.01%	1906.7	4.89%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-6	-1.602e+01	0.0000	735.0	6.96%	2242.7	5.75%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-6	-1.516e+01	0.0000	1640.0	15.53%	5389.6	13.81%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-6	-1.460e+01	0.0000	310.0	2.94%	857.7	2.20%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-6	-1.441e+01	0.0000	1648.0	15.60%	5436.4	13.93%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-5	-1.373e+01	0.0000	623.0	5.90%	1901.9	4.87%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-5	-1.362e+01	0.0000	1019.0	9.65%	3257.3	8.35%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-5	-1.309e+01	0.0000	1074.0	10.17%	3459.7	8.87%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-5	-1.298e+01	0.0000	81.0	0.77%	171.3	0.44%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-5	-1.262e+01	0.0000	2300.0	21.78%	7804.5	20.00%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-5	-1.208e+01	0.0000	1187.0	11.24%	3876.4	9.93%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-5	-1.176e+01	0.0000	771.0	7.30%	2440.1	6.25%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-5	-1.156e+01	0.0000	290.0	2.75%	826.9	2.12%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-4	-1.139e+01	0.0000	247.0	2.34%	689.6	1.77%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-4	-1.072e+01	0.0001	757.0	7.17%	2413.4	6.19%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-4	-9.891e+00	0.0002	177.0	1.68%	481.5	1.23%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-4	-9.804e+00	0.0002	274.0	2.59%	795.9	2.04%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-4	-9.590e+00	0.0002	282.0	2.67%	825.0	2.11%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-4	-9.565e+00	0.0002	1039.0	9.84%	3421.6	8.77%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-4	-9.543e+00	0.0002	140.0	1.33%	368.4	0.94%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-4	-9.541e+00	0.0002	1231.0	11.65%	4097.1	10.50%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-4	-9.330e+00	0.0002	1174.0	11.12%	3902.8	10.00%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-4	-9.285e+00	0.0003	69.0	0.65%	156.9	0.40%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-3	-7.881e+00	0.0010	101.0	0.96%	261.6	0.67%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-3	-7.756e+00	0.0012	1672.0	15.83%	5723.4	14.67%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-3	-7.751e+00	0.0012	71.0	0.67%	171.9	0.44%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-7.639e+00	0.0013	802.0	7.59%	2642.0	6.77%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-3	-7.552e+00	0.0014	372.0	3.52%	1156.2	2.96%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-7.490e+00	0.0014	272.0	2.58%	820.0	2.10%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-3	-6.918e+00	0.0025	801.0	7.58%	2658.0	6.81%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-6.850e+00	0.0027	445.0	4.21%	1419.5	3.64%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-2	-6.673e+00	0.0032	193.0	1.83%	569.1	1.46%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-2	-6.663e+00	0.0032	364.0	3.45%	1145.7	2.94%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-6.629e+00	0.0033	88.0	0.83%	231.9	0.59%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-2	-6.560e+00	0.0034	1595.0	15.10%	5493.6	14.08%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-2	-6.297e+00	0.0044	220.0	2.08%	664.0	1.70%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-2	-6.259e+00	0.0046	546.0	5.17%	1782.2	4.57%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-6.210e+00	0.0048	637.0	6.03%	2101.0	5.38%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-5.719e+00	0.0077	561.0	5.31%	1848.5	4.74%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-2	-5.717e+00	0.0077	212.0	2.01%	647.0	1.66%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-2	-5.675e+00	0.0079	56.0	0.53%	140.7	0.36%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-2	-5.602e+00	0.0084	187.0	1.77%	564.3	1.45%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.382e+00	0.0104	277.0	2.62%	872.2	2.24%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-5.355e+00	0.0106	1397.0	13.23%	4832.3	12.38%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-5.322e+00	0.0108	163.0	1.54%	488.9	1.25%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-5.259e+00	0.0114	151.0	1.43%	449.5	1.15%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-5.097e+00	0.0133	212.0	2.01%	656.2	1.68%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-2	-4.720e+00	0.0192	2444.0	23.14%	8653.0	22.18%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-4.574e+00	0.0221	171.0	1.62%	526.2	1.35%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-4.484e+00	0.0239	1267.0	12.00%	4403.4	11.28%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-4.443e+00	0.0247	2028.0	19.20%	7156.3	18.34%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-4.202e+00	0.0312	205.0	1.94%	648.5	1.66%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-4.137e+00	0.0330	496.0	4.70%	1664.6	4.27%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-4.116e+00	0.0334	334.0	3.16%	1096.5	2.81%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-4.086e+00	0.0342	771.0	7.30%	2642.4	6.77%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-4.054e+00	0.0350	100.0	0.95%	297.0	0.76%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-3.734e+00	0.0478	138.0	1.31%	428.6	1.10%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.657e+00	0.0512	601.0	5.69%	2052.0	5.26%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-3.613e+00	0.0531	537.0	5.08%	1826.3	4.68%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.594e+00	0.0537	444.0	4.20%	1497.6	3.84%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-3.552e+00	0.0555	1165.0	11.03%	4080.0	10.46%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.369e+00	0.0662	1236.0	11.70%	4346.9	11.14%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.251e+00	0.0739	334.0	3.16%	1119.7	2.87%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-3.250e+00	0.0739	498.0	4.72%	1701.0	4.36%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.246e+00	0.0739	110.0	1.04%	341.4	0.88%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-3.245e+00	0.0739	544.0	5.15%	1864.5	4.78%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-3.201e+00	0.0753	459.0	4.35%	1563.5	4.01%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.149e+00	0.0788	366.0	3.47%	1235.8	3.17%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-3.132e+00	0.0795	81.0	0.77%	245.9	0.63%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.107e+00	0.0809	2411.0	22.83%	8637.3	22.14%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.036e+00	0.0863	104.0	0.98%	324.0	0.83%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-2.975e+00	0.0910	452.0	4.28%	1546.1	3.96%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-2.960e+00	0.0917	59.0	0.56%	174.9	0.45%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-2.884e+00	0.0983	1070.0	10.13%	3772.8	9.67%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.815e+00	0.1045	100.0	0.95%	314.5	0.81%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.743e+00	0.1116	57.0	0.54%	170.4	0.44%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.687e+00	0.1171	629.0	5.96%	2191.6	5.62%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.506e+00	0.1394	369.0	3.49%	1267.3	3.25%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.452e+00	0.1461	355.0	3.36%	1219.7	3.13%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.428e+00	0.1486	840.0	7.95%	2965.7	7.60%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.339e+00	0.1614	367.0	3.47%	1266.8	3.25%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.197e+00	0.1848	272.0	2.58%	932.7	2.39%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.002e+00	0.2230	336.0	3.18%	1168.6	2.99%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.973e+00	0.2279	3063.0	29.00%	11128.1	28.52%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.957e+00	0.2302	148.0	1.40%	499.1	1.28%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.925e+00	0.2362	685.0	6.49%	2432.8	6.23%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.900e+00	0.2405	638.0	6.04%	2263.4	5.80%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.898e+00	0.2405	109.0	1.03%	363.1	0.93%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.895e+00	0.2405	494.0	4.68%	1742.5	4.47%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.848e+00	0.2484	392.0	3.71%	1376.1	3.53%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.833e+00	0.2507	539.0	5.10%	1908.6	4.89%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.732e+00	0.2754	551.0	5.22%	1957.7	5.02%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.719e+00	0.2774	14.0	0.13%	39.8	0.10%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-1.688e+00	0.2844	36.0	0.34%	113.0	0.29%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.687e+00	0.2844	107.0	1.01%	361.0	0.93%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.681e+00	0.2844	317.0	3.00%	1113.2	2.85%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.669e+00	0.2845	2351.0	22.26%	8545.8	21.90%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.572e+00	0.3115	481.0	4.55%	1712.8	4.39%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.526e+00	0.3242	64.0	0.61%	213.7	0.55%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.505e+00	0.3289	153.0	1.45%	530.9	1.36%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.499e+00	0.3291	392.0	3.71%	1393.9	3.57%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.470e+00	0.3367	75.0	0.71%	253.8	0.65%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.465e+00	0.3367	254.0	2.40%	895.6	2.30%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.463e+00	0.3367	427.0	4.04%	1522.0	3.90%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.462e+00	0.3367	181.0	1.71%	632.6	1.62%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.410e+00	0.3492	1754.0	16.61%	6381.5	16.35%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.373e+00	0.3603	318.0	3.01%	1131.9	2.90%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.329e+00	0.3744	3260.0	30.87%	11932.2	30.58%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.292e+00	0.3861	17.0	0.16%	53.6	0.14%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.190e+00	0.4253	317.0	3.00%	1137.7	2.92%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.168e+00	0.4320	124.0	1.17%	437.7	1.12%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.110e+00	0.4552	53.0	0.50%	183.7	0.47%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.058e+00	0.4771	207.0	1.96%	743.3	1.90%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.057e+00	0.4771	1975.0	18.70%	7237.7	18.55%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.047e+00	0.4771	257.0	2.43%	926.8	2.38%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.002e+00	0.4961	508.0	4.81%	1849.0	4.74%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.001e+00	0.4961	119.0	1.13%	425.2	1.09%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-9.898e-01	0.4969	1509.0	14.29%	5530.2	14.17%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-9.896e-01	0.4969	897.0	8.49%	3278.1	8.40%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-9.829e-01	0.4969	1295.0	12.26%	4743.4	12.16%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-9.638e-01	0.5018	952.0	9.01%	3483.3	8.93%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-9.371e-01	0.5126	1272.0	12.04%	4664.8	11.95%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-8.185e-01	0.5741	1743.0	16.50%	6417.4	16.45%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.944e-01	0.5850	336.0	3.18%	1232.3	3.16%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.907e-01	0.5850	1683.0	15.93%	6200.1	15.89%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-7.295e-01	0.6178	246.0	2.33%	905.8	2.32%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.127e-01	0.6217	72.0	0.68%	264.2	0.68%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.127e-01	0.6217	72.0	0.68%	264.2	0.68%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-7.027e-01	0.6247	70.0	0.66%	257.9	0.66%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-7.009e-01	0.6247	54.0	0.51%	198.2	0.51%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.675e-01	0.6406	41.0	0.39%	151.9	0.39%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-6.451e-01	0.6518	473.0	4.48%	1752.0	4.49%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.264e-01	0.6608	42.0	0.40%	156.4	0.40%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.203e-01	0.6615	130.0	1.23%	483.8	1.24%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-6.187e-01	0.6615	1553.0	14.70%	5749.1	14.73%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.680e-01	0.6901	361.0	3.42%	1344.9	3.45%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-5.648e-01	0.6901	496.0	4.70%	1845.1	4.73%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.497e-01	0.6960	94.0	0.89%	353.7	0.91%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.495e-01	0.6960	687.0	6.50%	2555.8	6.55%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-4.366e-01	0.7717	12.0	0.11%	48.9	0.13%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.365e-01	0.7717	687.0	6.50%	2572.9	6.59%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.997e-01	0.7930	5.0	0.05%	22.0	0.06%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-3.765e-01	0.8077	990.0	9.37%	3710.9	9.51%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.673e-01	0.8113	37.0	0.35%	147.4	0.38%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.636e-01	0.8113	2142.0	20.28%	7990.4	20.48%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-3.308e-01	0.8336	434.0	4.11%	1646.8	4.22%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-2.270e-01	0.9204	376.0	3.56%	1447.2	3.71%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.178e-01	0.9246	199.0	1.88%	779.6	2.00%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.120e-01	0.9256	108.0	1.02%	432.3	1.11%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.848e-01	0.9467	648.0	6.14%	2481.4	6.36%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.799e-01	0.9469	327.0	3.10%	1272.5	3.26%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.702e-01	0.9518	264.0	2.50%	1035.4	2.65%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.369e-01	0.9796	472.0	4.47%	1833.2	4.70%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.314e-01	0.9805	37.0	0.35%	163.6	0.42%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.259e-01	0.9814	490.0	4.64%	1905.7	4.88%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.042e-01	0.9984	68.0	0.64%	291.9	0.75%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.011e-01	0.9984	435.0	4.12%	1706.1	4.37%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-8.504e-02	1.0000	819.0	7.75%	3168.0	8.12%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.589e-02	1.0000	218.0	2.06%	885.8	2.27%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.764e-02	1.0000	420.0	3.98%	1665.9	4.27%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-6.375e-02	1.0000	13.0	0.12%	70.7	0.18%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-5.772e-02	1.0000	4.0	0.04%	28.6	0.07%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-5.414e-02	1.0000	44.0	0.42%	204.6	0.52%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.097e-02	1.0000	26.0	0.25%	129.4	0.33%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-4.231e-02	1.0000	135.0	1.28%	575.5	1.47%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-3.468e-02	1.0000	416.0	3.94%	1674.9	4.29%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.119e-02	1.0000	220.0	2.08%	917.0	2.35%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.798e-02	1.0000	666.0	6.31%	2640.2	6.77%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.363e-02	1.0000	142.0	1.34%	615.6	1.58%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.156e-02	1.0000	20.0	0.19%	111.1	0.28%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.486e-02	1.0000	40.0	0.38%	203.0	0.52%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.872e-03	1.0000	165.0	1.56%	730.0	1.87%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.965e-03	1.0000	68.0	0.64%	334.2	0.86%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-1.677e-03	1.0000	98.0	0.93%	478.4	1.23%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.690e-04	1.0000	192.0	1.82%	883.0	2.26%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-2.900e-05	1.0000	217.0	2.05%	1036.2	2.66%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.000e-06	1.0000	4129.0	39.09%	16093.1	41.24%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.000e-06	1.0000	341.0	3.23%	1614.7	4.14%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	114.0	1.08%	697.7	1.79%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-0.000e+00	1.0000	78.0	0.74%	543.9	1.39%