Information for motif1


Reverse Opposite:

p-value:1e-116
log p-value:-2.677e+02
Information Content per bp:1.613
Number of Target Sequences with motif215.0
Percentage of Target Sequences with motif12.82%
Number of Background Sequences with motif791.6
Percentage of Background Sequences with motif1.65%
Average Position of motif in Targets101.9 +/- 49.1bp
Average Position of motif in Background103.3 +/- 59.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:1
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-GTTAATSATTAA
GGTTAAACATTAA

MA0046.1_HNF1A/Jaspar

Match Rank:2
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-GTTAATSATTAA-
GGTTAATAATTAAC

MA0153.1_HNF1B/Jaspar

Match Rank:3
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GTTAATSATTAA
GTTAAATATTAA

PH0051.1_Hoxa4/Jaspar

Match Rank:4
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---GTTAATSATTAA--
CNAGTTAATTAATAANN

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.70
Offset:3
Orientation:forward strand
Alignment:GTTAATSATTAA
---AATAATT--

PH0018.1_Dbx1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GTTAATSATTAA---
TAATTAATTAATAATTA

PH0059.1_Hoxb4/Jaspar

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTTAATSATTAA--
CGCGTTAATTAATTACC

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTTAATSATTAA
GKTAATGR----

PH0019.1_Dbx2/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTTAATSATTAA
TTTAATTAATTAATTC

PH0070.1_Hoxc5/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GTTAATSATTAA--
CGAATTAATTAATTACT