Information for motif23


Reverse Opposite:

p-value:1e-6
log p-value:-1.444e+01
Information Content per bp:1.530
Number of Target Sequences with motif1203.0
Percentage of Target Sequences with motif71.74%
Number of Background Sequences with motif31664.0
Percentage of Background Sequences with motif66.15%
Average Position of motif in Targets100.4 +/- 55.0bp
Average Position of motif in Background100.4 +/- 58.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.76
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0498.1_Meis1/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CTGTCAGTGATC-
AGCTGTCACTCACCT

PB0195.1_Zbtb3_2/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CTGTCAGTGATC-
NNNNTGCCAGTGATTG

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CTGTCAGTGATC
GSCTGTCACTCA--

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTGTCAGTGATC
NCTGTCAATCAN-

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTGTCAGTGATC-----
CGAACAGTGCTCACTAT

PH0169.1_Tgif1/Jaspar

Match Rank:6
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------CTGTCAGTGATC
NNNCAGCTGTCAATATN-

PH0141.1_Pknox2/Jaspar

Match Rank:7
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CTGTCAGTGATC
AAGCACCTGTCAATAT--

PH0105.1_Meis3/Jaspar

Match Rank:8
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CTGTCAGTGATC
AATTACCTGTCAATAC--

FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGTCAGTGATC--
AGGTCANTGACCTN

PH0140.1_Pknox1/Jaspar

Match Rank:10
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CTGTCAGTGATC
AAAGACCTGTCAATCC--