Information for motif24


Reverse Opposite:

p-value:1e-5
log p-value:-1.364e+01
Information Content per bp:1.506
Number of Target Sequences with motif506.0
Percentage of Target Sequences with motif30.17%
Number of Background Sequences with motif11991.1
Percentage of Background Sequences with motif25.05%
Average Position of motif in Targets103.3 +/- 55.1bp
Average Position of motif in Background101.3 +/- 59.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGTGATCTATCA-
-GYCATCMATCAT

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGTGATCTATCA
RGCCATYAATCA

PH0140.1_Pknox1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGTGATCTATCA----
AAAGACCTGTCAATCC

MA0160.1_NR4A2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGTGATCTATCA
-GTGACCTT---

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGTGATCTATCA
--TCATCAATCA

PH0102.1_Meis1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGTGATCTATCA----
AACGAGCTGTCAATAC

MA0070.1_PBX1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGTGATCTATCA--
--CCATCAATCAAA

PH0105.1_Meis3/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGTGATCTATCA----
AATTACCTGTCAATAC

PH0104.1_Meis2/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGTGATCTATCA----
AAAGACCTGTCAATAC

PH0170.1_Tgif2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGTGATCTATCA----
AACTAGCTGTCAATAC