Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1677)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47871)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-115	-2.660e+02	0.0000	191.0	11.39%	593.6	1.24%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-101	-2.334e+02	0.0000	215.0	12.82%	949.3	1.98%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-65	-1.506e+02	0.0000	95.0	5.66%	236.3	0.49%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-52	-1.209e+02	0.0000	231.0	13.77%	2065.4	4.31%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-52	-1.201e+02	0.0000	316.0	18.84%	3525.3	7.36%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-51	-1.196e+02	0.0000	405.0	24.15%	5241.5	10.95%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-51	-1.183e+02	0.0000	243.0	14.49%	2290.4	4.79%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-37	-8.658e+01	0.0000	206.0	12.28%	2128.1	4.45%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-32	-7.578e+01	0.0000	220.0	13.12%	2558.1	5.34%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-29	-6.847e+01	0.0000	258.0	15.38%	3434.3	7.17%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-28	-6.483e+01	0.0000	209.0	12.46%	2566.8	5.36%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-23	-5.418e+01	0.0000	345.0	20.57%	5684.4	11.88%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-20	-4.678e+01	0.0000	223.0	13.30%	3272.6	6.84%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-20	-4.615e+01	0.0000	221.0	13.18%	3248.3	6.79%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-19	-4.474e+01	0.0000	170.0	10.14%	2256.3	4.71%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-18	-4.374e+01	0.0000	115.0	6.86%	1259.0	2.63%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-18	-4.223e+01	0.0000	372.0	22.18%	6762.0	14.13%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-18	-4.159e+01	0.0000	547.0	32.62%	11097.5	23.18%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-16	-3.891e+01	0.0000	66.0	3.94%	538.4	1.12%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-16	-3.813e+01	0.0000	433.0	25.82%	8422.8	17.60%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-15	-3.626e+01	0.0000	235.0	14.01%	3858.8	8.06%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-14	-3.279e+01	0.0000	64.0	3.82%	582.4	1.22%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-13	-3.032e+01	0.0000	268.0	15.98%	4838.4	10.11%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-12	-2.973e+01	0.0000	402.0	23.97%	8098.1	16.92%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-12	-2.924e+01	0.0000	78.0	4.65%	867.0	1.81%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-12	-2.913e+01	0.0000	318.0	18.96%	6075.6	12.69%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-12	-2.888e+01	0.0000	115.0	6.86%	1563.9	3.27%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-11	-2.572e+01	0.0000	201.0	11.99%	3496.3	7.30%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-10	-2.506e+01	0.0000	269.0	16.04%	5106.7	10.67%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-10	-2.320e+01	0.0000	70.0	4.17%	838.0	1.75%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-9	-2.289e+01	0.0000	183.0	10.91%	3205.5	6.70%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-9	-2.277e+01	0.0000	143.0	8.53%	2323.6	4.85%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-8	-2.056e+01	0.0000	139.0	8.29%	2316.4	4.84%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-8	-2.022e+01	0.0000	738.0	44.01%	17677.7	36.93%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-7	-1.787e+01	0.0000	259.0	15.44%	5259.5	10.99%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-7	-1.774e+01	0.0000	100.0	5.96%	1574.9	3.29%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-7	-1.721e+01	0.0000	152.0	9.06%	2745.9	5.74%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-7	-1.720e+01	0.0000	31.0	1.85%	276.6	0.58%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-7	-1.660e+01	0.0000	394.0	23.49%	8764.9	18.31%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-7	-1.634e+01	0.0000	75.0	4.47%	1098.5	2.29%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-6	-1.555e+01	0.0000	37.0	2.21%	397.5	0.83%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-6	-1.549e+01	0.0000	220.0	13.12%	4449.1	9.29%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-6	-1.464e+01	0.0000	66.0	3.94%	964.2	2.01%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-6	-1.456e+01	0.0000	129.0	7.69%	2339.3	4.89%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-6	-1.435e+01	0.0000	33.0	1.97%	349.9	0.73%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-6	-1.435e+01	0.0000	83.0	4.95%	1327.6	2.77%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-6	-1.415e+01	0.0000	313.0	18.66%	6872.8	14.36%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-5	-1.317e+01	0.0000	307.0	18.31%	6798.0	14.20%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-5	-1.278e+01	0.0000	68.0	4.05%	1062.2	2.22%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-5	-1.263e+01	0.0000	355.0	21.17%	8086.4	16.89%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-5	-1.234e+01	0.0000	140.0	8.35%	2706.2	5.65%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-5	-1.185e+01	0.0000	57.0	3.40%	862.4	1.80%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-5	-1.173e+01	0.0000	335.0	19.98%	7646.7	15.98%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-5	-1.159e+01	0.0000	102.0	6.08%	1859.0	3.88%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-4	-1.126e+01	0.0001	267.0	15.92%	5929.6	12.39%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-4	-1.108e+01	0.0001	153.0	9.12%	3091.7	6.46%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-4	-1.104e+01	0.0001	144.0	8.59%	2876.0	6.01%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-4	-1.098e+01	0.0001	229.0	13.66%	4984.8	10.41%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-4	-1.072e+01	0.0001	195.0	11.63%	4149.9	8.67%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-4	-1.045e+01	0.0001	10.0	0.60%	54.1	0.11%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-4	-1.040e+01	0.0001	34.0	2.03%	443.9	0.93%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-4	-9.818e+00	0.0002	35.0	2.09%	476.3	1.00%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-4	-9.792e+00	0.0002	51.0	3.04%	802.2	1.68%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-4	-9.726e+00	0.0002	26.0	1.55%	309.7	0.65%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-4	-9.528e+00	0.0003	444.0	26.48%	10771.7	22.50%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-4	-9.433e+00	0.0003	51.0	3.04%	814.4	1.70%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-4	-9.431e+00	0.0003	122.0	7.27%	2443.5	5.10%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-4	-9.393e+00	0.0003	294.0	17.53%	6798.4	14.20%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-4	-9.279e+00	0.0003	16.0	0.95%	147.4	0.31%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-3	-9.137e+00	0.0004	122.0	7.27%	2462.0	5.14%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-8.886e+00	0.0005	134.0	7.99%	2769.1	5.79%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-3	-8.675e+00	0.0006	18.0	1.07%	188.2	0.39%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-3	-8.538e+00	0.0007	40.0	2.39%	612.4	1.28%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-3	-8.493e+00	0.0007	153.0	9.12%	3266.5	6.82%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-8.387e+00	0.0007	247.0	14.73%	5673.0	11.85%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-3	-8.361e+00	0.0008	8.0	0.48%	45.1	0.09%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-3	-8.176e+00	0.0009	24.0	1.43%	304.3	0.64%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-8.041e+00	0.0010	118.0	7.04%	2434.6	5.09%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-7.608e+00	0.0015	18.0	1.07%	206.1	0.43%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-3	-7.458e+00	0.0018	91.0	5.43%	1817.5	3.80%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-3	-7.427e+00	0.0018	177.0	10.55%	3958.3	8.27%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-3	-7.378e+00	0.0019	925.0	55.16%	24504.5	51.19%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-3	-7.312e+00	0.0020	99.0	5.90%	2019.5	4.22%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-7.075e+00	0.0025	14.0	0.83%	146.0	0.31%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-3	-7.068e+00	0.0025	20.0	1.19%	253.7	0.53%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-6.944e+00	0.0028	136.0	8.11%	2960.2	6.18%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-3	-6.933e+00	0.0028	75.0	4.47%	1466.0	3.06%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-2	-6.805e+00	0.0031	144.0	8.59%	3173.3	6.63%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-6.734e+00	0.0033	626.0	37.33%	16162.2	33.77%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-6.660e+00	0.0035	258.0	15.38%	6143.1	12.83%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-2	-6.435e+00	0.0043	320.0	19.08%	7822.5	16.34%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-6.407e+00	0.0044	191.0	11.39%	4415.9	9.23%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-6.299e+00	0.0049	153.0	9.12%	3446.1	7.20%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-2	-6.247e+00	0.0051	72.0	4.29%	1434.6	3.00%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-2	-6.199e+00	0.0053	253.0	15.09%	6065.9	12.67%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-2	-6.164e+00	0.0054	76.0	4.53%	1535.3	3.21%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-6.134e+00	0.0055	243.0	14.49%	5808.1	12.13%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-2	-6.099e+00	0.0056	69.0	4.11%	1371.7	2.87%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-2	-6.055e+00	0.0058	25.0	1.49%	377.1	0.79%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-2	-5.987e+00	0.0062	555.0	33.09%	14313.7	29.90%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-5.653e+00	0.0085	106.0	6.32%	2310.6	4.83%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-2	-5.430e+00	0.0106	64.0	3.82%	1291.2	2.70%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-2	-5.179e+00	0.0135	75.0	4.47%	1575.1	3.29%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-5.001e+00	0.0159	141.0	8.41%	3262.9	6.82%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-4.957e+00	0.0165	103.0	6.14%	2292.2	4.79%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-4.850e+00	0.0182	579.0	34.53%	15189.5	31.73%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-2	-4.796e+00	0.0190	50.0	2.98%	994.0	2.08%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-4.716e+00	0.0204	15.0	0.89%	211.8	0.44%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-4.662e+00	0.0213	78.0	4.65%	1687.2	3.52%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-4.530e+00	0.0241	177.0	10.55%	4257.0	8.89%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-4.525e+00	0.0241	173.0	10.32%	4152.9	8.68%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-4.194e+00	0.0331	110.0	6.56%	2542.7	5.31%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-4.154e+00	0.0342	386.0	23.02%	9972.1	20.83%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-4.059e+00	0.0373	108.0	6.44%	2504.5	5.23%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-4.020e+00	0.0384	205.0	12.22%	5071.0	10.59%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-3.961e+00	0.0404	51.0	3.04%	1069.1	2.23%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.698e+00	0.0521	22.0	1.31%	394.8	0.82%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.663e+00	0.0535	298.0	17.77%	7648.8	15.98%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-3.598e+00	0.0566	58.0	3.46%	1269.9	2.65%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-3.558e+00	0.0584	266.0	15.86%	6793.2	14.19%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-3.531e+00	0.0595	32.0	1.91%	635.5	1.33%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-3.494e+00	0.0613	87.0	5.19%	2018.9	4.22%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-1	-3.270e+00	0.0760	23.0	1.37%	436.6	0.91%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-3.156e+00	0.0845	24.0	1.43%	465.5	0.97%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.052e+00	0.0930	28.0	1.67%	566.7	1.18%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-3.022e+00	0.0951	67.0	4.00%	1548.7	3.24%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-3.017e+00	0.0951	28.0	1.67%	568.6	1.19%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.001e+00	0.0956	173.0	10.32%	4363.5	9.12%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-2.951e+00	0.0997	46.0	2.74%	1018.4	2.13%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-2.935e+00	0.1005	358.0	21.35%	9448.9	19.74%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-2.885e+00	0.1049	45.0	2.68%	998.4	2.09%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.856e+00	0.1071	44.0	2.62%	975.6	2.04%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.786e+00	0.1141	265.0	15.80%	6912.5	14.44%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-2.754e+00	0.1168	254.0	15.15%	6616.8	13.82%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.605e+00	0.1347	57.0	3.40%	1330.4	2.78%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.526e+00	0.1447	54.0	3.22%	1260.8	2.63%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.502e+00	0.1471	170.0	10.14%	4366.9	9.12%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-2.462e+00	0.1520	227.0	13.54%	5934.9	12.40%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.330e+00	0.1721	21.0	1.25%	438.8	0.92%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-2.216e+00	0.1916	78.0	4.65%	1927.2	4.03%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.204e+00	0.1926	356.0	21.23%	9573.7	20.00%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.198e+00	0.1926	296.0	17.65%	7903.5	16.51%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.164e+00	0.1977	48.0	2.86%	1140.3	2.38%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.139e+00	0.2012	308.0	18.37%	8252.6	17.24%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-2.109e+00	0.2059	44.0	2.62%	1041.1	2.18%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.085e+00	0.2095	81.0	4.83%	2025.1	4.23%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.062e+00	0.2129	66.0	3.94%	1627.9	3.40%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.049e+00	0.2142	81.0	4.83%	2030.9	4.24%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.968e+00	0.2306	20.0	1.19%	436.9	0.91%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.968e+00	0.2306	55.0	3.28%	1346.3	2.81%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-1.962e+00	0.2306	62.0	3.70%	1533.3	3.20%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.929e+00	0.2353	8.0	0.48%	146.7	0.31%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.920e+00	0.2357	240.0	14.31%	6417.7	13.41%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.893e+00	0.2405	32.0	1.91%	749.8	1.57%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.889e+00	0.2405	176.0	10.49%	4652.4	9.72%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.861e+00	0.2452	33.0	1.97%	778.0	1.63%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.826e+00	0.2524	12.0	0.72%	246.3	0.51%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.742e+00	0.2727	72.0	4.29%	1832.2	3.83%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.709e+00	0.2801	729.0	43.47%	20267.4	42.34%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.664e+00	0.2911	37.0	2.21%	903.5	1.89%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.642e+00	0.2958	9.0	0.54%	183.0	0.38%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.598e+00	0.3073	38.0	2.27%	937.5	1.96%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.596e+00	0.3073	74.0	4.41%	1909.5	3.99%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.559e+00	0.3154	21.0	1.25%	492.6	1.03%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.546e+00	0.3178	13.0	0.78%	287.2	0.60%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.522e+00	0.3235	55.0	3.28%	1404.9	2.93%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-1.501e+00	0.3284	10.0	0.60%	214.3	0.45%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.414e+00	0.3559	196.0	11.69%	5326.6	11.13%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.401e+00	0.3588	105.0	6.26%	2797.9	5.85%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.289e+00	0.3986	87.0	5.19%	2322.2	4.85%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.285e+00	0.3986	40.0	2.39%	1030.2	2.15%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.281e+00	0.3986	67.0	4.00%	1771.0	3.70%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.268e+00	0.4000	63.0	3.76%	1663.4	3.48%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.233e+00	0.4121	292.0	17.41%	8082.6	16.89%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.223e+00	0.4137	6.0	0.36%	128.6	0.27%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.186e+00	0.4271	18.0	1.07%	446.9	0.93%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.180e+00	0.4271	94.0	5.61%	2540.5	5.31%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.160e+00	0.4334	221.0	13.18%	6107.5	12.76%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.145e+00	0.4374	375.0	22.36%	10463.8	21.86%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.123e+00	0.4446	41.0	2.44%	1081.3	2.26%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.120e+00	0.4446	60.0	3.58%	1607.1	3.36%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.113e+00	0.4446	66.0	3.94%	1775.3	3.71%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.098e+00	0.4483	137.0	8.17%	3764.7	7.87%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.086e+00	0.4513	9.0	0.54%	214.3	0.45%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.079e+00	0.4522	88.0	5.25%	2396.4	5.01%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.073e+00	0.4523	67.0	4.00%	1811.1	3.78%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.050e+00	0.4603	12.0	0.72%	297.6	0.62%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.033e+00	0.4657	30.0	1.79%	791.3	1.65%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-9.777e-01	0.4896	274.0	16.34%	7674.3	16.03%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-9.613e-01	0.4951	48.0	2.86%	1303.2	2.72%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-9.461e-01	0.5000	16.0	0.95%	416.0	0.87%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-9.210e-01	0.5101	6.0	0.36%	145.8	0.30%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-8.795e-01	0.5290	276.0	16.46%	7774.1	16.24%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-8.678e-01	0.5324	15.0	0.89%	397.0	0.83%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.607e-01	0.5335	14.0	0.83%	370.8	0.77%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-8.274e-01	0.5487	124.0	7.39%	3481.9	7.27%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-8.195e-01	0.5503	31.0	1.85%	852.0	1.78%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-8.178e-01	0.5503	4.0	0.24%	97.9	0.20%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-8.004e-01	0.5552	363.0	21.65%	10288.2	21.49%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-7.985e-01	0.5552	28.0	1.67%	771.3	1.61%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-7.950e-01	0.5552	79.0	4.71%	2215.6	4.63%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.944e-01	0.5552	67.0	4.00%	1875.7	3.92%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.510e-01	0.5718	364.0	21.71%	10344.2	21.61%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-7.303e-01	0.5809	7.0	0.42%	187.2	0.39%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-7.250e-01	0.5812	68.0	4.05%	1922.8	4.02%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-7.076e-01	0.5885	20.0	1.19%	559.8	1.17%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-6.855e-01	0.5988	1.0	0.06%	20.8	0.04%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.647e-01	0.6084	110.0	6.56%	3140.7	6.56%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.256e-01	0.6296	604.0	36.02%	17276.2	36.09%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-6.072e-01	0.6383	57.0	3.40%	1641.6	3.43%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.948e-01	0.6432	7.0	0.42%	200.0	0.42%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.490e-01	0.6701	70.0	4.17%	2034.5	4.25%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.346e-01	0.6735	11.0	0.66%	325.5	0.68%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.346e-01	0.6735	11.0	0.66%	325.5	0.68%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-4.939e-01	0.6982	324.0	19.32%	9366.7	19.57%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.503e-01	0.7260	5.0	0.30%	156.4	0.33%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.402e-01	0.7300	473.0	28.21%	13683.6	28.59%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-4.212e-01	0.7406	155.0	9.24%	4552.0	9.51%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.952e-01	0.7566	29.0	1.73%	888.2	1.86%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.471e-01	0.7903	1.0	0.06%	35.1	0.07%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.363e-01	0.7952	37.0	2.21%	1146.7	2.40%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.991e-01	0.8216	5.0	0.30%	177.3	0.37%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.880e-01	0.8271	49.0	2.92%	1525.8	3.19%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.793e-01	0.8306	9.0	0.54%	310.9	0.65%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.564e-01	0.8460	103.0	6.14%	3145.4	6.57%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.542e-01	0.8460	2.0	0.12%	81.1	0.17%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.536e-01	0.8460	20.0	1.19%	662.4	1.38%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.504e-01	0.8460	1.0	0.06%	43.6	0.09%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.364e-01	0.8481	46.0	2.74%	1462.6	3.06%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.322e-01	0.8481	31.0	1.85%	1009.4	2.11%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.300e-01	0.8481	21.0	1.25%	702.6	1.47%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.266e-01	0.8481	16.0	0.95%	547.1	1.14%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.252e-01	0.8481	76.0	4.53%	2368.0	4.95%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.193e-01	0.8481	2.0	0.12%	86.9	0.18%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.158e-01	0.8481	16.0	0.95%	551.8	1.15%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.022e-01	0.8516	3.0	0.18%	126.3	0.26%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.752e-01	0.8712	13.0	0.78%	471.9	0.99%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.211e-01	0.9157	19.0	1.13%	694.9	1.45%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.105e-01	0.9216	6.0	0.36%	262.0	0.55%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-9.187e-02	0.9350	18.0	1.07%	683.8	1.43%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-5.191e-02	0.9691	30.0	1.79%	1124.4	2.35%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.482e-02	0.9817	21.0	1.25%	856.9	1.79%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.743e-02	0.9850	19.0	1.13%	804.9	1.68%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-2.462e-02	0.9850	61.0	3.64%	2196.0	4.59%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-2.052e-02	0.9850	13.0	0.78%	609.1	1.27%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	39.4	0.08%