Information for motif1


Reverse Opposite:

p-value:1e-333
log p-value:-7.677e+02
Information Content per bp:1.716
Number of Target Sequences with motif1326.0
Percentage of Target Sequences with motif18.44%
Number of Background Sequences with motif322.8
Percentage of Background Sequences with motif5.39%
Average Position of motif in Targets99.7 +/- 51.4bp
Average Position of motif in Background100.3 +/- 55.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:1
Score:0.97
Offset:-2
Orientation:forward strand
Alignment:--TGTTTACWTW
CNTGTTTACATA

MA0148.3_FOXA1/Jaspar

Match Rank:2
Score:0.96
Offset:-4
Orientation:forward strand
Alignment:----TGTTTACWTW-
TCCATGTTTACTTTG

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:TGTTTACWTW
TGTTTACTTT

MA0047.2_Foxa2/Jaspar

Match Rank:4
Score:0.95
Offset:0
Orientation:forward strand
Alignment:TGTTTACWTW--
TGTTTACTTAGG

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:5
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:TGTTTACWTW
TGTTTACTTT

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--TGTTTACWTW-----
NSTGTTTRCWCAGBNNN

PB0015.1_Foxa2_1/Jaspar

Match Rank:7
Score:0.91
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTTACWTW--
NNNTTTGTTTACTTTTN

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:8
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---TGTTTACWTW
NYYTGTTTACHN-

MA0031.1_FOXD1/Jaspar

Match Rank:9
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-TGTTTACWTW
ATGTTTAC---

MA0593.1_FOXP2/Jaspar

Match Rank:10
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--TGTTTACWTW
TNTGTTTACTT-