Information for motif12


Reverse Opposite:

p-value:1e-38
log p-value:-8.941e+01
Information Content per bp:1.800
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets105.9 +/- 55.3bp
Average Position of motif in Background80.2 +/- 47.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCTGCGA
CGGAGC-----

MA0048.1_NHLH1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCTGCGA
NCGCAGCTGCGN

MA0522.1_Tcf3/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCTGCGA
NTGCAGCTGTG-

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCTGCGA
GGGAGGACNG-

PB0003.1_Ascl2_1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GGAGCTGCGA--
NNNNAGCAGCTGCTGAN

E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGAGCTGCGA
GCAGCTGTNN

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCTGCGA
CAGCAGCTGN--

MA0500.1_Myog/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGAGCTGCGA
GACAGCTGCAG

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GGAGCTGCGA
NNAGCAGCTGCT-

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCTGCGA----
AGATGCTRCTRCCHT