Information for motif19


Reverse Opposite:

p-value:1e-24
log p-value:-5.667e+01
Information Content per bp:1.622
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets90.2 +/- 60.0bp
Average Position of motif in Background53.2 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGGCCCTGCTTT-
-CCCCCTGCTGTG

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGGCCCTGCTTT---
AATCGCACTGCATTCCG

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TGGCCCTGCTTT
----GCTTCC--

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TGGCCCTGCTTT----
-NNTCCTGCTGTGNNN

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGGCCCTGCTTT----
-TNTCCTGCTGTGNNG

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGGCCCTGCTTT
-NNACTTGCCTT

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TGGCCCTGCTTT----
-TCNCCTGCTGNGNNN

MA0598.1_EHF/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TGGCCCTGCTTT
----CCTTCCTG

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:TGGCCCTGCTTT
------NGCTN-

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.50
Offset:4
Orientation:forward strand
Alignment:TGGCCCTGCTTT
----GCTGTG--