Information for motif20


Reverse Opposite:

p-value:1e-24
log p-value:-5.593e+01
Information Content per bp:1.790
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets112.0 +/- 49.5bp
Average Position of motif in Background103.3 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-CAATTARBGC
BCMATTAG---

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.81
Offset:-5
Orientation:forward strand
Alignment:-----CAATTARBGC--
ACAAGCAATTAATGAAT

MA0125.1_Nobox/Jaspar

Match Rank:3
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--CAATTARBGC
ACCAATTA----

MA0075.1_Prrx2/Jaspar

Match Rank:4
Score:0.80
Offset:1
Orientation:forward strand
Alignment:CAATTARBGC
-AATTA----

MA0132.1_Pdx1/Jaspar

Match Rank:5
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:CAATTARBGC
-AATTAG---

PH0005.1_Barhl1/Jaspar

Match Rank:6
Score:0.80
Offset:-6
Orientation:forward strand
Alignment:------CAATTARBGC
AACAACCAATTAATTC

MA0158.1_HOXA5/Jaspar

Match Rank:7
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:CAATTARBGC
-AATTAGTG-

PH0029.1_En2/Jaspar

Match Rank:8
Score:0.79
Offset:-6
Orientation:reverse strand
Alignment:------CAATTARBGC-
NTNCACTAATTAGNGCA

MA0063.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CAATTARBGC
CAATTAA---

PH0127.1_Nobox/Jaspar

Match Rank:10
Score:0.78
Offset:-6
Orientation:reverse strand
Alignment:------CAATTARBGC-
GNTNNCTAATTAGNNCG