Information for motif21


Reverse Opposite:

p-value:1e-24
log p-value:-5.552e+01
Information Content per bp:1.835
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets89.2 +/- 57.8bp
Average Position of motif in Background100.1 +/- 35.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0159.1_Rfx4_2/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CBAGTAACTA-----
NNNGTAACTANGNNA

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CBAGTAACTA------
GANGTTAACTAGTTTNN

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CBAGTAACTA-----
AGCTGTTAACTAGCCGT

PB0158.1_Rfx3_2/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CBAGTAACTA---------
NNTNGNNGTAACCAAGNNNNAGN

PH0055.1_Hoxa7_2/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CBAGTAACTA------
GTAGTAATTAATGGAA

PH0062.1_Hoxb7/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CBAGTAACTA------
GTAGTAATTAATGCAA

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CBAGTAACTA---
-CTGTTGCTAGGS

MA0124.1_NKX3-1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CBAGTAACTA-
----TAAGTAT

PH0039.1_Mnx1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CBAGTAACTA------
GTACTAATTAGTGGCG

MA0067.1_Pax2/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CBAGTAACTA
-NCGTGACN-