Information for motif27


Reverse Opposite:

p-value:1e-19
log p-value:-4.564e+01
Information Content per bp:1.530
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif0.31%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets100.0 +/- 53.1bp
Average Position of motif in Background146.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CATGCGGCGT--
TCNCCTGCTGNGNNN

PB0147.1_Max_2/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CATGCGGCGT
GTGCCACGCGACTG

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CATGCGGCGT--
NNTCCTGCTGTGNNN

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CATGCGGCGT--
TNTCCTGCTGTGNNG

PB0024.1_Gcm1_1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CATGCGGCGT---
NNNNATGCGGGTNNNN

PB0143.1_Klf7_2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CATGCGGCGT------
NNNTNGGGCGTATNNTN

MA0104.3_Mycn/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CATGCGGCGT
CACGTGGC--

NRF1/Promoter/Homer

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CATGCGGCGT
GTGCGCATGCGC---

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CATGCGGCGT
GCGCATGCGCAG-

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CATGCGGCGT----
NNNAAGGGGGCGGGNNN