Information for motif3


Reverse Opposite:

p-value:1e-105
log p-value:-2.428e+02
Information Content per bp:1.609
Number of Target Sequences with motif1797.0
Percentage of Target Sequences with motif24.99%
Number of Background Sequences with motif903.7
Percentage of Background Sequences with motif15.08%
Average Position of motif in Targets103.8 +/- 53.0bp
Average Position of motif in Background102.7 +/- 61.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0097.1_Lhx6_2/Jaspar

Match Rank:1
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----CTRATTAGCA---
TCCACTAATTAGCGGTT

PH0098.1_Lhx8/Jaspar

Match Rank:2
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----CTRATTAGCA---
ACCCCTAATTAGCGGTG

PH0155.1_Prrx2/Jaspar

Match Rank:3
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----CTRATTAGCA--
NTTCGCTAATTAGCTNT

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:4
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CTRATTAGCA
-TAATTAGN-

PH0032.1_Evx2/Jaspar

Match Rank:5
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----CTRATTAGCA---
ANCGCTAATTAGCGGTN

PH0131.1_Pax4/Jaspar

Match Rank:6
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----CTRATTAGCA---
TGAACTAATTAGCCCAC

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CTRATTAGCA
ADBTAATTAR--

PB0031.1_Hoxa3_1/Jaspar

Match Rank:8
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CTRATTAGCA---
GTTAATTANCTCNN

PH0031.1_Evx1/Jaspar

Match Rank:9
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----CTRATTAGCA---
AGAACTAATTAGTGGAC

PH0081.1_Pdx1/Jaspar

Match Rank:10
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---CTRATTAGCA---
AAGGTAATTAGCTCAT