Information for motif35


Reverse Opposite:

p-value:1e-11
log p-value:-2.584e+01
Information Content per bp:1.704
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets113.9 +/- 60.4bp
Average Position of motif in Background182.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CACTGGAGGCAG
CACAGCAGGGGG

MA0598.1_EHF/Jaspar

Match Rank:2
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CACTGGAGGCAG-
-----CAGGAAGG

PB0091.1_Zbtb3_1/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CACTGGAGGCAG
AATCGCACTGCATTCCG

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CACTGGAGGCAG
CCACACAGCAGGAGA

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CACTGGAGGCAG
GAGCACAGCAGGACA

MA0474.1_Erg/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CACTGGAGGCAG---
----ACAGGAAGTGG

MA0098.2_Ets1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CACTGGAGGCAG-
NNNACAGGAAGTGGN

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CACTGGAGGCAG
AACAGGAAGT--

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CACTGGAGGCAG
CCACACAGCAGGAGA

PB0195.1_Zbtb3_2/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CACTGGAGGCAG
CAATCACTGGCAGAAT