Information for motif4


Reverse Opposite:

p-value:1e-90
log p-value:-2.084e+02
Information Content per bp:1.662
Number of Target Sequences with motif1688.0
Percentage of Target Sequences with motif23.47%
Number of Background Sequences with motif867.4
Percentage of Background Sequences with motif14.47%
Average Position of motif in Targets97.9 +/- 53.7bp
Average Position of motif in Background100.7 +/- 59.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0087.1_Sox5/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:ATTGTTTGTC
ATTGTTA---

MA0040.1_Foxq1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-ATTGTTTGTC
TATTGTTTATT

MA0041.1_Foxd3/Jaspar

Match Rank:3
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-ATTGTTTGTC-
GAATGTTTGTTT

MA0042.1_FOXI1/Jaspar

Match Rank:4
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-ATTGTTTGTC-
GGATGTTTGTTT

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.74
Offset:0
Orientation:forward strand
Alignment:ATTGTTTGTC
ATTGTT----

MA0084.1_SRY/Jaspar

Match Rank:6
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:ATTGTTTGTC
ATTGTTTAN-

MF0005.1_Forkhead_class/Jaspar

Match Rank:7
Score:0.72
Offset:2
Orientation:forward strand
Alignment:ATTGTTTGTC-
--TGTTTATTT

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-ATTGTTTGTC-----
ANTCCTTTGTCTNNNN

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----ATTGTTTGTC--
CNNNTATTGTTCNNNNN

PB0073.1_Sox7_1/Jaspar

Match Rank:10
Score:0.70
Offset:-9
Orientation:reverse strand
Alignment:---------ATTGTTTGTC---
TNNANNTCTATTGTTNTNNANN