Information for motif6


Reverse Opposite:

p-value:1e-73
log p-value:-1.689e+02
Information Content per bp:1.676
Number of Target Sequences with motif1520.0
Percentage of Target Sequences with motif21.13%
Number of Background Sequences with motif799.6
Percentage of Background Sequences with motif13.34%
Average Position of motif in Targets99.9 +/- 56.0bp
Average Position of motif in Background101.0 +/- 71.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGYGGGG
CCCCCTGCTGTG

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CCCTGYGGGG
-GCTGTG---

MA0524.1_TFAP2C/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGYGGGG---
TGCCCTGGGGCNANN

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGYGGGG---
TNTCCTGCTGTGNNG

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGYGGGG---
TCNCCTGCTGNGNNN

MA0154.2_EBF1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCCTGYGGGG
TCCCTGGGGAN

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CCCTGYGGGG
GTCCCCAGGGGA-

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCCTGYGGGG--
ATTCCCTGAGGGGAA

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCCTGYGGGG--
ATTGCCTGAGGCGAA

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCCTGYGGGG
ATGCCCTGAGGC-