Information for motif8


Reverse Opposite:

p-value:1e-54
log p-value:-1.259e+02
Information Content per bp:1.845
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets102.2 +/- 45.5bp
Average Position of motif in Background50.5 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0137.1_Pitx1/Jaspar

Match Rank:1
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----CTAATCCCTC---
NTTGTTAATCCCTCTNN

PH0139.1_Pitx3/Jaspar

Match Rank:2
Score:0.80
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATCCCTC-
GNNAGCTAATCCCCCN

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.80
Offset:1
Orientation:forward strand
Alignment:CTAATCCCTC
-TAATCCCN-

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CTAATCCCTC
GCTAATCC---

PH0035.1_Gsc/Jaspar

Match Rank:5
Score:0.79
Offset:-5
Orientation:forward strand
Alignment:-----CTAATCCCTC--
AATCGTTAATCCCTTTA

PH0138.1_Pitx2/Jaspar

Match Rank:6
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATCCCTC--
GNNNATTAATCCCTNCN

PH0130.1_Otx2/Jaspar

Match Rank:7
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATCCCTC--
GANNATTAATCCCTNNN

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----CTAATCCCTC---
ATAGTTAATCCCCCNNA

PH0125.1_Obox5_2/Jaspar

Match Rank:9
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----CTAATCCCTC--
GATAATTAATCCCTCTT

PH0129.1_Otx1/Jaspar

Match Rank:10
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATCCCTC--
NNNAATTAATCCCCNCN