Information for motif9


Reverse Opposite:

p-value:1e-50
log p-value:-1.165e+02
Information Content per bp:1.815
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets85.1 +/- 54.5bp
Average Position of motif in Background114.8 +/- 46.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0156.1_Plagl1_2/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGGCAGCCCT----
NNNNGGTACCCCCCANN

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGGCAGCCCT
--CNAGGCCT

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGGCAGCCCT---
NNGGCCACGCCTTTN

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGGCAGCCCT
--CTAGGCCT

MA0146.2_Zfx/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGGCAGCCCT-------
---CAGGCCNNGGCCNN

PB0154.1_Osr1_2/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----AGGCAGCCCT-
NNNTTAGGTAGCNTNT

MA0598.1_EHF/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGGCAGCCCT
CAGGAAGG---

Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGGCAGCCCT---
SCAGYCADGCATGAC

MA0597.1_THAP1/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AGGCAGCCCT--
---CTGCCCGCA

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AGGCAGCCCT
---CAGCC--