Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 7193)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 5995)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-326	-7.511e+02	0.0000	1671.0	23.23%	494.6	8.25%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-301	-6.950e+02	0.0000	1320.0	18.35%	344.1	5.74%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-295	-6.800e+02	0.0000	1415.0	19.67%	395.9	6.60%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-157	-3.621e+02	0.0000	1424.0	19.80%	563.3	9.40%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-147	-3.385e+02	0.0000	656.0	9.12%	168.8	2.82%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-143	-3.308e+02	0.0000	465.0	6.47%	91.3	1.52%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-126	-2.914e+02	0.0000	528.0	7.34%	128.4	2.14%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-94	-2.173e+02	0.0000	2136.0	29.70%	1169.8	19.51%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-89	-2.064e+02	0.0000	978.0	13.60%	411.5	6.86%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-80	-1.847e+02	0.0000	1892.0	26.31%	1038.2	17.32%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-75	-1.747e+02	0.0000	1060.0	14.74%	489.6	8.17%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-73	-1.695e+02	0.0000	3076.0	42.77%	1947.7	32.49%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-59	-1.368e+02	0.0000	991.0	13.78%	483.3	8.06%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-59	-1.359e+02	0.0000	1452.0	20.19%	795.2	13.27%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-58	-1.352e+02	0.0000	705.0	9.80%	305.1	5.09%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-53	-1.232e+02	0.0000	2022.0	28.11%	1226.5	20.46%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-50	-1.155e+02	0.0000	642.0	8.93%	284.2	4.74%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-47	-1.094e+02	0.0000	3260.0	45.33%	2214.7	36.94%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-46	-1.081e+02	0.0000	1088.0	15.13%	583.0	9.73%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-44	-1.030e+02	0.0000	1339.0	18.62%	764.9	12.76%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-43	-1.012e+02	0.0000	1687.0	23.46%	1018.6	16.99%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-43	-9.964e+01	0.0000	1316.0	18.30%	753.8	12.57%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-43	-9.937e+01	0.0000	1544.0	21.47%	917.4	15.30%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-42	-9.725e+01	0.0000	841.0	11.69%	430.2	7.18%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-39	-9.113e+01	0.0000	1996.0	27.75%	1268.4	21.16%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-33	-7.761e+01	0.0000	384.0	5.34%	162.8	2.72%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-25	-5.942e+01	0.0000	3874.0	53.87%	2854.6	47.62%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-25	-5.868e+01	0.0000	291.0	4.05%	123.6	2.06%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-23	-5.514e+01	0.0000	1475.0	20.51%	956.8	15.96%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-23	-5.389e+01	0.0000	1351.0	18.78%	866.1	14.45%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-22	-5.140e+01	0.0000	1010.0	14.04%	620.9	10.36%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-21	-4.970e+01	0.0000	2429.0	33.77%	1711.6	28.55%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-20	-4.808e+01	0.0000	1154.0	16.05%	733.2	12.23%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-20	-4.807e+01	0.0000	1189.0	16.53%	759.2	12.67%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-20	-4.614e+01	0.0000	139.0	1.93%	47.9	0.80%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-19	-4.380e+01	0.0000	1031.0	14.34%	652.2	10.88%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-17	-4.040e+01	0.0000	392.0	5.45%	206.7	3.45%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-17	-3.970e+01	0.0000	206.0	2.86%	89.8	1.50%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-15	-3.595e+01	0.0000	465.0	6.47%	262.7	4.38%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-14	-3.429e+01	0.0000	219.0	3.05%	102.6	1.71%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-14	-3.410e+01	0.0000	621.0	8.63%	375.9	6.27%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-14	-3.300e+01	0.0000	3094.0	43.02%	2310.8	38.55%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-13	-3.015e+01	0.0000	234.0	3.25%	116.4	1.94%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-12	-2.982e+01	0.0000	118.0	1.64%	46.0	0.77%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-12	-2.941e+01	0.0000	362.0	5.03%	202.5	3.38%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-12	-2.873e+01	0.0000	424.0	5.90%	246.6	4.11%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-10	-2.520e+01	0.0000	681.0	9.47%	439.2	7.33%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-10	-2.505e+01	0.0000	1710.0	23.78%	1231.5	20.54%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-10	-2.482e+01	0.0000	213.0	2.96%	109.4	1.83%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-10	-2.331e+01	0.0000	1338.0	18.60%	946.4	15.79%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-9	-2.282e+01	0.0000	117.0	1.63%	51.2	0.85%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-9	-2.269e+01	0.0000	98.0	1.36%	41.0	0.68%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-8	-2.052e+01	0.0000	544.0	7.56%	350.6	5.85%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-8	-2.025e+01	0.0000	31.0	0.43%	7.9	0.13%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-8	-1.975e+01	0.0000	204.0	2.84%	110.4	1.84%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-8	-1.920e+01	0.0000	379.0	5.27%	233.5	3.89%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-8	-1.842e+01	0.0000	19.0	0.26%	3.1	0.05%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-7	-1.813e+01	0.0000	184.0	2.56%	99.5	1.66%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-7	-1.740e+01	0.0000	1132.0	15.74%	809.3	13.50%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-7	-1.692e+01	0.0000	106.0	1.47%	50.6	0.84%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-7	-1.679e+01	0.0000	76.0	1.06%	32.9	0.55%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-7	-1.636e+01	0.0000	744.0	10.34%	513.6	8.57%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-6	-1.606e+01	0.0000	448.0	6.23%	291.2	4.86%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-6	-1.599e+01	0.0000	511.0	7.11%	338.5	5.65%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-6	-1.584e+01	0.0000	834.0	11.60%	584.6	9.75%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-6	-1.576e+01	0.0000	46.0	0.64%	16.4	0.27%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-6	-1.469e+01	0.0000	801.0	11.14%	563.2	9.40%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-6	-1.445e+01	0.0000	134.0	1.86%	71.8	1.20%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-6	-1.432e+01	0.0000	1211.0	16.84%	885.1	14.77%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-6	-1.399e+01	0.0000	840.0	11.68%	596.9	9.96%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-6	-1.397e+01	0.0000	136.0	1.89%	73.4	1.23%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-5	-1.370e+01	0.0000	259.0	3.60%	159.3	2.66%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-5	-1.337e+01	0.0000	95.0	1.32%	47.3	0.79%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-5	-1.254e+01	0.0000	603.0	8.38%	419.6	7.00%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-5	-1.204e+01	0.0000	962.0	13.38%	700.0	11.68%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-5	-1.181e+01	0.0000	685.0	9.52%	485.3	8.10%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-5	-1.165e+01	0.0000	55.0	0.76%	24.0	0.40%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-4	-1.124e+01	0.0000	957.0	13.31%	700.2	11.68%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-4	-1.117e+01	0.0000	1548.0	21.52%	1171.1	19.54%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-4	-1.112e+01	0.0000	698.0	9.71%	498.5	8.32%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-4	-1.108e+01	0.0000	428.0	5.95%	291.6	4.86%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-4	-1.105e+01	0.0000	209.0	2.91%	129.7	2.16%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-4	-1.094e+01	0.0001	969.0	13.47%	711.0	11.86%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-4	-1.016e+01	0.0001	319.0	4.44%	212.8	3.55%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-4	-1.015e+01	0.0001	130.0	1.81%	75.3	1.26%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-4	-1.005e+01	0.0001	550.0	7.65%	388.2	6.48%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-4	-9.651e+00	0.0002	710.0	9.87%	514.6	8.58%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-4	-9.463e+00	0.0002	197.0	2.74%	125.0	2.08%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-4	-9.280e+00	0.0003	122.0	1.70%	71.7	1.20%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-3	-9.144e+00	0.0003	73.0	1.02%	38.9	0.65%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-3	-9.045e+00	0.0003	36.0	0.50%	15.5	0.26%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-8.831e+00	0.0004	365.0	5.08%	252.0	4.20%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-3	-8.813e+00	0.0004	170.0	2.36%	106.5	1.78%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-3	-8.791e+00	0.0004	349.0	4.85%	239.6	4.00%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-3	-8.744e+00	0.0004	825.0	11.47%	609.4	10.17%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-3	-8.742e+00	0.0004	261.0	3.63%	173.5	2.89%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-3	-8.587e+00	0.0005	877.0	12.19%	651.5	10.87%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-3	-8.213e+00	0.0007	1134.0	15.77%	858.9	14.33%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-3	-8.177e+00	0.0007	68.0	0.95%	36.9	0.62%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-3	-8.021e+00	0.0008	57.0	0.79%	29.3	0.49%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-3	-7.911e+00	0.0009	49.0	0.68%	24.4	0.41%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-3	-7.807e+00	0.0010	146.0	2.03%	91.0	1.52%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-3	-7.755e+00	0.0010	2260.0	31.42%	1775.8	29.62%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-3	-7.633e+00	0.0011	192.0	2.67%	125.7	2.10%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-3	-7.603e+00	0.0012	325.0	4.52%	226.0	3.77%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-2	-6.805e+00	0.0026	1371.0	19.06%	1059.1	17.67%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-6.732e+00	0.0027	551.0	7.66%	404.8	6.75%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-6.499e+00	0.0034	158.0	2.20%	103.7	1.73%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-6.479e+00	0.0035	357.0	4.96%	254.0	4.24%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-6.375e+00	0.0038	97.0	1.35%	59.2	0.99%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-6.343e+00	0.0039	183.0	2.54%	122.1	2.04%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-2	-6.001e+00	0.0054	1529.0	21.26%	1194.2	19.92%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-5.989e+00	0.0055	794.0	11.04%	601.7	10.04%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-2	-5.976e+00	0.0055	1171.0	16.28%	904.7	15.09%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-2	-5.936e+00	0.0057	188.0	2.61%	127.1	2.12%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-5.705e+00	0.0071	8.0	0.11%	2.8	0.05%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-2	-5.590e+00	0.0079	247.0	3.43%	173.1	2.89%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-2	-5.559e+00	0.0080	40.0	0.56%	21.2	0.35%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-5.548e+00	0.0081	149.0	2.07%	100.0	1.67%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-5.495e+00	0.0084	368.0	5.12%	267.4	4.46%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-5.275e+00	0.0104	485.0	6.74%	360.1	6.01%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-2	-5.061e+00	0.0128	39.0	0.54%	21.5	0.36%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-5.011e+00	0.0133	79.0	1.10%	49.8	0.83%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-2	-5.000e+00	0.0134	398.0	5.53%	293.1	4.89%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-2	-4.887e+00	0.0148	1598.0	22.22%	1261.6	21.05%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-4.880e+00	0.0148	216.0	3.00%	152.8	2.55%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-2	-4.727e+00	0.0171	67.0	0.93%	41.5	0.69%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-4.698e+00	0.0175	521.0	7.24%	392.8	6.55%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-4.498e+00	0.0212	2100.0	29.20%	1677.0	27.98%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-4.331e+00	0.0249	440.0	6.12%	330.9	5.52%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-4.258e+00	0.0266	214.0	2.98%	153.5	2.56%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-1	-4.210e+00	0.0277	468.0	6.51%	353.5	5.90%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-4.151e+00	0.0291	194.0	2.70%	138.1	2.30%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-4.065e+00	0.0315	286.0	3.98%	210.6	3.51%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-3.911e+00	0.0365	12.0	0.17%	5.1	0.09%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-1	-3.631e+00	0.0479	250.0	3.48%	184.1	3.07%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-1	-3.591e+00	0.0495	18.0	0.25%	9.6	0.16%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.588e+00	0.0495	73.0	1.02%	48.3	0.80%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.520e+00	0.0524	66.0	0.92%	43.2	0.72%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.406e+00	0.0583	71.0	0.99%	47.5	0.79%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.281e+00	0.0656	302.0	4.20%	227.8	3.80%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-3.274e+00	0.0656	226.0	3.14%	167.2	2.79%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.116e+00	0.0763	26.0	0.36%	15.7	0.26%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-3.067e+00	0.0796	515.0	7.16%	399.2	6.66%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-3.013e+00	0.0834	140.0	1.95%	101.8	1.70%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-2.931e+00	0.0899	27.0	0.38%	16.9	0.28%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.867e+00	0.0951	431.0	5.99%	333.4	5.56%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.785e+00	0.1026	54.0	0.75%	36.5	0.61%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-1	-2.704e+00	0.1105	179.0	2.49%	133.5	2.23%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-2.574e+00	0.1250	73.0	1.02%	51.5	0.86%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.507e+00	0.1329	223.0	3.10%	169.2	2.82%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.480e+00	0.1356	1182.0	16.43%	949.2	15.83%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.475e+00	0.1356	119.0	1.65%	87.8	1.46%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.399e+00	0.1450	1138.0	15.82%	914.1	15.25%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-2.383e+00	0.1464	369.0	5.13%	287.6	4.80%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-2.306e+00	0.1572	95.0	1.32%	69.3	1.16%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.116e+00	0.1888	3.0	0.04%	1.8	0.03%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-2.105e+00	0.1897	910.0	12.65%	731.8	12.21%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.051e+00	0.1991	42.0	0.58%	29.1	0.49%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.016e+00	0.2048	1046.0	14.54%	844.5	14.09%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.979e+00	0.2112	121.0	1.68%	91.8	1.53%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.938e+00	0.2186	248.0	3.45%	193.1	3.22%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.836e+00	0.2406	180.0	2.50%	139.6	2.33%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-1.770e+00	0.2555	64.0	0.89%	47.7	0.80%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.740e+00	0.2616	98.0	1.36%	74.3	1.24%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.717e+00	0.2660	300.0	4.17%	237.1	3.96%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.643e+00	0.2850	347.0	4.82%	276.9	4.62%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.616e+00	0.2909	204.0	2.84%	160.0	2.67%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.570e+00	0.3028	373.0	5.19%	298.5	4.98%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.540e+00	0.3103	27.0	0.38%	19.9	0.33%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.484e+00	0.3262	467.0	6.49%	376.8	6.29%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.464e+00	0.3309	558.0	7.76%	451.2	7.53%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.351e+00	0.3683	39.0	0.54%	29.3	0.49%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.328e+00	0.3747	322.0	4.48%	259.0	4.32%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.313e+00	0.3781	90.0	1.25%	70.5	1.18%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.303e+00	0.3798	80.0	1.11%	62.3	1.04%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.302e+00	0.3798	307.0	4.27%	247.1	4.12%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.240e+00	0.4000	13.0	0.18%	10.0	0.17%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.155e+00	0.4330	38.0	0.53%	29.6	0.49%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.149e+00	0.4330	101.0	1.40%	80.4	1.34%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.078e+00	0.4627	1630.0	22.66%	1346.4	22.46%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.025e+00	0.4851	321.0	4.46%	262.3	4.38%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.010e+00	0.4897	174.0	2.42%	141.4	2.36%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-9.762e-01	0.5037	233.0	3.24%	190.2	3.17%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-9.551e-01	0.5117	269.0	3.74%	220.4	3.68%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-9.178e-01	0.5283	243.0	3.38%	199.7	3.33%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-8.476e-01	0.5636	1343.0	18.67%	1114.6	18.59%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-8.021e-01	0.5867	270.0	3.75%	223.4	3.73%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-7.809e-01	0.5961	266.0	3.70%	220.3	3.68%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-7.706e-01	0.5991	439.0	6.10%	364.2	6.08%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-7.497e-01	0.6086	370.0	5.14%	307.6	5.13%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-7.087e-01	0.6308	219.0	3.05%	182.6	3.05%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-6.819e-01	0.6445	486.0	6.76%	405.9	6.77%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-5.500e-01	0.7316	266.0	3.70%	224.5	3.74%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.444e-01	0.7319	21.0	0.29%	18.2	0.30%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-5.375e-01	0.7332	317.0	4.41%	267.3	4.46%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.227e-01	0.7404	42.0	0.58%	36.1	0.60%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-5.079e-01	0.7476	1027.0	14.28%	862.8	14.39%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.713e-01	0.7716	85.0	1.18%	73.5	1.23%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.572e-01	0.7787	1064.0	14.79%	896.0	14.95%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-4.391e-01	0.7889	319.0	4.44%	271.3	4.53%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-4.385e-01	0.7889	61.0	0.85%	53.3	0.89%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.374e-01	0.7889	134.0	1.86%	115.1	1.92%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.256e-01	0.7889	721.0	10.03%	609.4	10.17%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.653e-01	0.8328	176.0	2.45%	152.6	2.55%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.518e-01	0.8359	47.0	0.65%	42.1	0.70%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.518e-01	0.8359	47.0	0.65%	42.1	0.70%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.514e-01	0.8359	90.0	1.25%	79.8	1.33%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.328e-01	0.8439	293.0	4.07%	252.2	4.21%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.995e-01	0.8683	247.0	3.43%	214.1	3.57%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.989e-01	0.8683	8.0	0.11%	8.1	0.13%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.495e-01	0.9041	24.0	0.33%	23.3	0.39%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.290e-01	0.9186	1179.0	16.39%	1004.7	16.76%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-2.285e-01	0.9186	45.0	0.63%	42.0	0.70%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.734e-01	0.9620	844.0	11.74%	726.3	12.12%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.631e-01	0.9675	11.0	0.15%	12.8	0.21%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-1.613e-01	0.9675	291.0	4.05%	257.4	4.29%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.567e-01	0.9675	39.0	0.54%	38.3	0.64%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.397e-01	0.9769	486.0	6.76%	425.1	7.09%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.189e-01	0.9928	87.0	1.21%	82.3	1.37%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.167e-01	0.9928	674.0	9.37%	587.3	9.80%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-9.257e-02	1.0000	424.0	5.90%	376.5	6.28%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-9.207e-02	1.0000	295.0	4.10%	265.6	4.43%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-8.956e-02	1.0000	49.0	0.68%	49.6	0.83%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-8.863e-02	1.0000	341.0	4.74%	305.4	5.09%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.275e-02	1.0000	334.0	4.64%	303.2	5.06%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.500e-02	1.0000	281.0	3.91%	258.9	4.32%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.971e-02	1.0000	144.0	2.00%	138.8	2.32%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.499e-02	1.0000	229.0	3.18%	214.3	3.58%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.111e-02	1.0000	136.0	1.89%	132.5	2.21%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.275e-02	1.0000	628.0	8.73%	564.0	9.41%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.246e-02	1.0000	26.0	0.36%	31.1	0.52%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.592e-02	1.0000	554.0	7.70%	503.2	8.39%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-8.556e-03	1.0000	90.0	1.25%	95.7	1.60%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-8.255e-03	1.0000	1.0	0.01%	4.8	0.08%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.756e-03	1.0000	132.0	1.84%	137.6	2.29%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.929e-03	1.0000	77.0	1.07%	86.1	1.44%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.050e-04	1.0000	145.0	2.02%	155.9	2.60%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.970e-04	1.0000	107.0	1.49%	119.4	1.99%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.410e-04	1.0000	152.0	2.11%	164.4	2.74%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-7.700e-05	1.0000	1484.0	20.63%	1347.0	22.47%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.500e-05	1.0000	51.0	0.71%	69.6	1.16%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-6.300e-05	1.0000	21.0	0.29%	36.1	0.60%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.100e-05	1.0000	241.0	3.35%	257.2	4.29%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-7.000e-06	1.0000	10.0	0.14%	25.3	0.42%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	2784.0	38.71%	2506.8	41.82%