Information for motif1


Reverse Opposite:

p-value:1e-285
log p-value:-6.566e+02
Information Content per bp:1.706
Number of Target Sequences with motif1713.0
Percentage of Target Sequences with motif23.82%
Number of Background Sequences with motif3950.9
Percentage of Background Sequences with motif9.32%
Average Position of motif in Targets99.8 +/- 51.6bp
Average Position of motif in Background100.2 +/- 59.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0148.3_FOXA1/Jaspar

Match Rank:1
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:RCWRAGYAAACA----
-CAAAGTAAACANNNN

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.96
Offset:-3
Orientation:forward strand
Alignment:---RCWRAGYAAACA--
NNNVCTGWGYAAACASN

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.95
Offset:2
Orientation:forward strand
Alignment:RCWRAGYAAACA
--AAAGTAAACA

MA0047.2_Foxa2/Jaspar

Match Rank:4
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:RCWRAGYAAACA
NCTAAGTAAACA

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:5
Score:0.95
Offset:2
Orientation:forward strand
Alignment:RCWRAGYAAACA
--AAAGTAAACA

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:6
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:RCWRAGYAAACA--
--TATGTAAACANG

MA0593.1_FOXP2/Jaspar

Match Rank:7
Score:0.90
Offset:3
Orientation:forward strand
Alignment:RCWRAGYAAACA--
---AAGTAAACAAA

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:8
Score:0.89
Offset:3
Orientation:reverse strand
Alignment:RCWRAGYAAACA---
---NDGTAAACARRN

MA0031.1_FOXD1/Jaspar

Match Rank:9
Score:0.88
Offset:5
Orientation:forward strand
Alignment:RCWRAGYAAACA-
-----GTAAACAT

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:10
Score:0.87
Offset:5
Orientation:reverse strand
Alignment:RCWRAGYAAACA-
-----GTAAACAG