Information for motif11


Reverse Opposite:

p-value:1e-25
log p-value:-5.845e+01
Information Content per bp:1.653
Number of Target Sequences with motif437.0
Percentage of Target Sequences with motif6.08%
Number of Background Sequences with motif1506.1
Percentage of Background Sequences with motif3.55%
Average Position of motif in Targets99.2 +/- 54.9bp
Average Position of motif in Background103.0 +/- 58.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CACAGTGTGA--
GAGCACAGCAGGACA

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CACAGTGTGA---
NNTNNACAATGGGANNN

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CACAGTGTGA--
CCACACAGCAGGAGA

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CACAGTGTGA--
CCACACAGCAGGAGA

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CACAGTGTGA
CACAGN----

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CACAGTGTGA--
--AGGTGTGAAM

PB0013.1_Eomes_1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CACAGTGTGA-----
GAAAAGGTGTGAAAATT

MA0078.1_Sox17/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CACAGTGTGA
GACAATGNN-

MA0442.1_SOX10/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CACAGTGTGA
--CTTTGT--

MA0007.2_AR/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CACAGTGTGA--
AAGAACAGAATGTTC