Information for motif18


Reverse Opposite:

p-value:1e-12
log p-value:-2.970e+01
Information Content per bp:1.876
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets83.6 +/- 58.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CATACATTAACT--
NNCATTCATTCATNNN

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CATACATTAACT
---YCATTAMC-

MA0046.1_HNF1A/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CATACATTAACT
GNTAATNATTAACC

PB0081.1_Tcf1_1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CATACATTAACT-----
ACTTAGTTAACTAAAAA

PH0088.1_Isl2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CATACATTAACT-
CAAAATCAATTAATTT

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CATACATTAACT
ATTTGCATACAATGG--

MA0135.1_Lhx3/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CATACATTAACT----
---AAATTAATTAATC

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CATACATTAACT
GACCACATTCATACAAT

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CATACATTAACT
GGTTAAACATTAA--

PH0134.1_Pbx1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CATACATTAACT----
TCACCCATCAATAAACA