Information for motif23


Reverse Opposite:

p-value:1e-8
log p-value:-1.984e+01
Information Content per bp:1.504
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets95.1 +/- 61.4bp
Average Position of motif in Background58.8 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGGCGAGAGACT-
AGGTGNCAGACAG

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGGCGAGAGACT
AGGTGHCAGACA

MA0471.1_E2F6/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGCGAGAGACT
GGGCGGGAAGG-

MA0024.2_E2F1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGGCGAGAGACT
CGGGCGGGAGG--

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGGCGAGAGACT
-GGCGGGAARN-

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGGCGAGAGACT
AAGGCAAGTGT--

MA0469.1_E2F3/Jaspar

Match Rank:7
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------AGGCGAGAGACT
NNGTGNGGGCGGGAG---

MA0470.1_E2F4/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGCGAGAGACT
GGGCGGGAAGG-

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGGCGAGAGACT
TGGCGGGAAAHB

PB0013.1_Eomes_1/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AGGCGAGAGACT-
GAAAAGGTGTGAAAATT