Information for motif24


Reverse Opposite:

p-value:1e-7
log p-value:-1.731e+01
Information Content per bp:1.530
Number of Target Sequences with motif178.0
Percentage of Target Sequences with motif2.47%
Number of Background Sequences with motif680.8
Percentage of Background Sequences with motif1.61%
Average Position of motif in Targets100.1 +/- 52.3bp
Average Position of motif in Background97.3 +/- 60.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0512.1_Rxra/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCA--
CAAAGGTCAGA

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCA-
CAAAGGTCAG

MA0597.1_THAP1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCA-
TNNGGGCAG

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGCA-----
GGCGAGGGGTCAAGGGC

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:5
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------AGAGGGCA
GTAGGGCAAAGGTCA

PB0049.1_Nr2f2_1/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGCA----
TCTCAAAGGTCACGAG

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------AGAGGGCA
TAGGGCAAAGGTCA

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGCA----
TCTCAAAGGTCACCTG

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AGAGGGCA-----
NNNNTTGGGCACNNCN

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:10
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------AGAGGGCA----
TGGCCACCAGGTGGCACTNT