Information for motif25


Reverse Opposite:

p-value:1e-7
log p-value:-1.696e+01
Information Content per bp:1.748
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif112.8
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets118.0 +/- 49.7bp
Average Position of motif in Background96.3 +/- 56.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0124.1_NKX3-1/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:TTGATAAGTW-
----TAAGTAT

MA0151.1_ARID3A/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTGATAAGTW
TTTAAT-----

PH0051.1_Hoxa4/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTGATAAGTW-----
GATTATTAATTAACTTG

PH0172.1_Tlx2/Jaspar

Match Rank:4
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------TTGATAAGTW
TAATTAATTAATAACTA

PH0004.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTGATAAGTW------
NTNNTTAAGTGGTTANN

PH0108.1_Msx3/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTGATAAGTW---
NNNTTAATTGGTTTTN

PH0019.1_Dbx2/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TTGATAAGTW-
TTTAATTAATTAATTC

PB0197.1_Zfp105_2/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TTGATAAGTW--
ATGGTTCAATAATTTTG

PH0028.1_En1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTGATAAGTW---
GNATTAATTAGTTNNC

PH0120.1_Nkx6-3/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TTGATAAGTW--
GAAAATTAATTACTTTG