Information for motif4


Reverse Opposite:

p-value:1e-96
log p-value:-2.227e+02
Information Content per bp:1.578
Number of Target Sequences with motif1080.0
Percentage of Target Sequences with motif15.02%
Number of Background Sequences with motif3249.9
Percentage of Background Sequences with motif7.67%
Average Position of motif in Targets102.8 +/- 52.8bp
Average Position of motif in Background99.1 +/- 62.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:YTAATTARCH
YTAATTAVHT

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:2
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-YTAATTARCH
NCTAATTA---

PB0031.1_Hoxa3_1/Jaspar

Match Rank:3
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-YTAATTARCH---
GTTAATTANCTCNN

PH0131.1_Pax4/Jaspar

Match Rank:4
Score:0.90
Offset:-4
Orientation:forward strand
Alignment:----YTAATTARCH---
TGAACTAATTAGCCCAC

PH0074.1_Hoxd1/Jaspar

Match Rank:5
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----YTAATTARCH---
TAAACTAATTAGCTGTA

PH0133.1_Pax7/Jaspar

Match Rank:6
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----YTAATTARCH---
CGAACTAATTAGTACTA

PH0050.1_Hoxa3/Jaspar

Match Rank:7
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-YTAATTARCH---
ACTAATTANCNCNA

MA0132.1_Pdx1/Jaspar

Match Rank:8
Score:0.88
Offset:2
Orientation:reverse strand
Alignment:YTAATTARCH
--AATTAG--

PH0160.1_Shox2/Jaspar

Match Rank:9
Score:0.88
Offset:-5
Orientation:reverse strand
Alignment:-----YTAATTARCH--
NNNAATTAATTAANNNG

PH0155.1_Prrx2/Jaspar

Match Rank:10
Score:0.88
Offset:-5
Orientation:reverse strand
Alignment:-----YTAATTARCH--
NTTCGCTAATTAGCTNT