Information for motif7


Reverse Opposite:

p-value:1e-49
log p-value:-1.131e+02
Information Content per bp:1.745
Number of Target Sequences with motif271.0
Percentage of Target Sequences with motif3.77%
Number of Background Sequences with motif562.0
Percentage of Background Sequences with motif1.33%
Average Position of motif in Targets102.9 +/- 53.8bp
Average Position of motif in Background104.4 +/- 58.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:1
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:CTAATAGGATTA
GTAATCDGATTA

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CTAATAGGATTA
YTAATYNRATTA

MA0467.1_Crx/Jaspar

Match Rank:3
Score:0.79
Offset:2
Orientation:forward strand
Alignment:CTAATAGGATTA-
--AAGAGGATTAG

PH0126.1_Obox6/Jaspar

Match Rank:4
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CTAATAGGATTA---
AAAAACGGATTATTG

PH0025.1_Dmbx1/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CTAATAGGATTA-----
TGAACCGGATTAATGAA

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.72
Offset:6
Orientation:reverse strand
Alignment:CTAATAGGATTA--
------GGATTAGC

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:CTAATAGGATTA
----NGGGATTA

PH0121.1_Obox1/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CTAATAGGATTA-----
TTAAGGGGATTAACTAC

PH0035.1_Gsc/Jaspar

Match Rank:9
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTAATAGGATTA------
-NNAAGGGATTAACGANT

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTAATAGGATTA-----
TTAGAGGGATTAACAAT