Information for motif1


Reverse Opposite:

p-value:1e-91
log p-value:-2.095e+02
Information Content per bp:1.840
Number of Target Sequences with motif67.0
Percentage of Target Sequences with motif7.95%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets110.1 +/- 43.3bp
Average Position of motif in Background92.7 +/- 41.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0046.1_HNF1A/Jaspar

Match Rank:1
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GTTAATGATT---
GGTTAATAATTAAC

MA0153.1_HNF1B/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GTTAATGATT--
GTTAAATATTAA

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:3
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GTTAATGATT--
GGTTAAACATTAA

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GTTAATGATT
GKTAATGR--

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.72
Offset:3
Orientation:forward strand
Alignment:GTTAATGATT
---AATAATT

PH0019.1_Dbx2/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GTTAATGATT--
TTTAATTAATTAATTC

PH0073.1_Hoxc9/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GTTAATGATT---
NNAATTAATGACCNNN

PH0051.1_Hoxa4/Jaspar

Match Rank:8
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GTTAATGATT----
CNAGTTAATTAATAANN

PH0150.1_Pou4f3/Jaspar

Match Rank:9
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GTTAATGATT--
AGTTATTAATGAGGTC

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTTAATGATT
GTTAATGGCC