Information for motif13


Reverse Opposite:

p-value:1e-33
log p-value:-7.755e+01
Information Content per bp:1.724
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.80%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets90.3 +/- 56.7bp
Average Position of motif in Background102.1 +/- 70.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0160.1_NR4A2/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TTTGGCCTCC
-GTGACCTT-

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TTTGGCCTCC-
-CNGTCCTCCC

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TTTGGCCTCC
--TGACCT--

MA0512.1_Rxra/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTTGGCCTCC-
NCTGACCTTTG

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGGCCTCC
TGACCTTTGACCTC-

MA0018.2_CREB1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TTTGGCCTCC
--TGACGTCA

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTTGGCCTCC
CNAGGCCT--

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TTTGGCCTCC-
-CTGACCTTTG

MA0161.1_NFIC/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TTTGGCCTCC
-TTGGCA---

MA0071.1_RORA_1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TTTGGCCTCC--
--TGACCTTGAT