Information for motif29


Reverse Opposite:

p-value:1e-19
log p-value:-4.459e+01
Information Content per bp:1.662
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif4.27%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets98.2 +/- 56.7bp
Average Position of motif in Background102.6 +/- 43.2bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0117.1_Mafb/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GAGCTGATAG
--GCTGACGC

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAGCTGATAG
HCAGCTGDTN-

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GAGCTGATAG-
GGTGYTGACAGS

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAGCTGATAG
ACAGCTGTTV-

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAGCTGATAG
CAGCTGTT--

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGCTGATAG
NCAGCTGCTG-

MA0060.2_NFYA/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAGCTGATAG-----
AGAGTGCTGATTGGTCCA

MA0521.1_Tcf12/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAGCTGATAG
NNGCAGCTGTT--

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GAGCTGATAG
NNAGCAGCTGCT--

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAGCTGATAG
CAGCTGNT--