Information for motif30


Reverse Opposite:

p-value:1e-18
log p-value:-4.299e+01
Information Content per bp:1.657
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.49%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets108.2 +/- 47.7bp
Average Position of motif in Background82.4 +/- 72.9bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGATGCCCTT----
GGGTGTGCCCAAAAGG

PB0014.1_Esrra_1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GGATGCCCTT-----
NNNNATGACCTTGANTN

MA0141.2_Esrrb/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GGATGCCCTT-----
---TGACCTTGANNN

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GGATGCCCTT--
--NTGACCTTGA

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GGATGCCCTT---
---TGACCTTGAV

MA0592.1_ESRRA/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGATGCCCTT--
-NGTGACCTTGG

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GGATGCCCTT---
---TGACCTTGAN

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GGATGCCCTT--
--CTGACCTTTG

MA0505.1_Nr5a2/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGATGCCCTT------
-GCTGACCTTGAACTN

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGATGCCCTT-----
NNNGTGACCTTTGNNN