Information for motif36


Reverse Opposite:

p-value:1e-5
log p-value:-1.367e+01
Information Content per bp:1.530
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.90%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets85.3 +/- 56.2bp
Average Position of motif in Background134.6 +/- 2.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GGCACAGC
CCAGGAACAG-

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:GGCACAGC
--CACAGN

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGCACAGC------
GAGCACAGCAGGACA

PB0133.1_Hic1_2/Jaspar

Match Rank:4
Score:0.68
Offset:-7
Orientation:reverse strand
Alignment:-------GGCACAGC-
NNNNTTGGGCACNNCN

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGCACAGC------
CCACACAGCAGGAGA

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GGCACAGC-
----CAGCC

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGCACAGC------
CCACACAGCAGGAGA

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GGCACAGC------
--CACAGCAGGGGG

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGCACAGC------
AATCGCACTGCATTCCG

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGCACAGC-----
CGAAGCACACAAAATA