Information for motif8


Reverse Opposite:

p-value:1e-41
log p-value:-9.505e+01
Information Content per bp:1.658
Number of Target Sequences with motif79.0
Percentage of Target Sequences with motif9.37%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif1.38%
Average Position of motif in Targets104.8 +/- 56.0bp
Average Position of motif in Background80.8 +/- 44.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0114.2_HNF4A/Jaspar

Match Rank:1
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---GTCAAAGTCC--
NAGNNCAAAGTCCAN

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.79
Offset:-5
Orientation:forward strand
Alignment:-----GTCAAAGTCC-
CANAGNNCAAAGTCCA

MA0484.1_HNF4G/Jaspar

Match Rank:3
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----GTCAAAGTCC-
AGAGTCCAAAGTCCA

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GTCAAAGTCC-----
GGCAAAAGTCCAATAA

MA0017.1_NR2F1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GTCAAAGTCC-
AGGTTCAAAGGTCA

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GTCAAAGTCC
ACATCAAAGG--

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GTCAAAGTCC
ACATCAAAGGNA

MA0523.1_TCF7L2/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GTCAAAGTCC
AAAGATCAAAGGAA

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTCAAAGTCC-
GAGGTCAAAGGTCA

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GTCAAAGTCC--
NNNAGATCAAAGGANNN