Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 843)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 705)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-57	-1.331e+02	0.0000	92.0	10.91%	8.6	1.22%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-53	-1.233e+02	0.0000	96.0	11.39%	10.2	1.44%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-40	-9.212e+01	0.0000	51.0	6.05%	3.2	0.46%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-22	-5.275e+01	0.0000	76.0	9.02%	16.9	2.39%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-22	-5.178e+01	0.0000	206.0	24.44%	85.1	12.06%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-19	-4.394e+01	0.0000	79.0	9.37%	20.3	2.88%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-18	-4.299e+01	0.0000	21.0	2.49%	1.9	0.27%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-17	-4.137e+01	0.0000	283.0	33.57%	145.2	20.58%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-17	-4.091e+01	0.0000	41.0	4.86%	6.1	0.86%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-16	-3.768e+01	0.0000	36.0	4.27%	5.8	0.82%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-16	-3.726e+01	0.0000	19.0	2.25%	1.1	0.16%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-15	-3.539e+01	0.0000	109.0	12.93%	39.3	5.57%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-15	-3.525e+01	0.0000	130.0	15.42%	51.5	7.30%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-14	-3.431e+01	0.0000	115.0	13.64%	43.8	6.21%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-14	-3.405e+01	0.0000	132.0	15.66%	53.7	7.62%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-14	-3.393e+01	0.0000	81.0	9.61%	25.5	3.62%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-14	-3.301e+01	0.0000	110.0	13.05%	41.5	5.89%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-14	-3.258e+01	0.0000	150.0	17.79%	65.4	9.26%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-13	-3.123e+01	0.0000	108.0	12.81%	41.0	5.81%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-13	-3.057e+01	0.0000	109.0	12.93%	42.3	6.00%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-12	-2.932e+01	0.0000	37.0	4.39%	7.7	1.09%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-12	-2.894e+01	0.0000	58.0	6.88%	16.9	2.40%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-12	-2.778e+01	0.0000	57.0	6.76%	16.9	2.39%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-11	-2.664e+01	0.0000	221.0	26.22%	118.3	16.77%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-11	-2.542e+01	0.0000	26.0	3.08%	4.7	0.67%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-9	-2.225e+01	0.0000	140.0	16.61%	68.1	9.65%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-8	-1.961e+01	0.0000	122.0	14.47%	59.6	8.45%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-8	-1.945e+01	0.0000	85.0	10.08%	36.5	5.17%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-8	-1.882e+01	0.0000	102.0	12.10%	47.4	6.72%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-7	-1.774e+01	0.0000	122.0	14.47%	62.0	8.79%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-7	-1.739e+01	0.0000	174.0	20.64%	97.3	13.79%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-7	-1.692e+01	0.0000	201.0	23.84%	117.7	16.68%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-7	-1.657e+01	0.0000	123.0	14.59%	63.1	8.94%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-6	-1.569e+01	0.0000	20.0	2.37%	4.3	0.61%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-6	-1.518e+01	0.0000	104.0	12.34%	52.6	7.45%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-6	-1.500e+01	0.0000	209.0	24.79%	126.2	17.88%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-6	-1.468e+01	0.0000	55.0	6.52%	22.9	3.24%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-6	-1.444e+01	0.0000	10.0	1.19%	1.6	0.22%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-6	-1.444e+01	0.0000	10.0	1.19%	1.7	0.24%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-6	-1.392e+01	0.0000	34.0	4.03%	11.6	1.65%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-5	-1.354e+01	0.0000	43.0	5.10%	17.0	2.41%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-5	-1.329e+01	0.0000	190.0	22.54%	115.2	16.32%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-5	-1.292e+01	0.0000	27.0	3.20%	8.5	1.20%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-5	-1.285e+01	0.0000	119.0	14.12%	65.9	9.34%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-5	-1.215e+01	0.0000	15.0	1.78%	3.9	0.55%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-5	-1.197e+01	0.0000	32.0	3.80%	11.5	1.63%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-5	-1.181e+01	0.0000	141.0	16.73%	83.0	11.76%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-5	-1.157e+01	0.0000	93.0	11.03%	49.2	6.98%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-4	-1.107e+01	0.0001	111.0	13.17%	63.0	8.93%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-4	-1.081e+01	0.0001	25.0	2.97%	8.9	1.26%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-4	-1.025e+01	0.0002	8.0	0.95%	0.0	0.00%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-4	-9.827e+00	0.0003	173.0	20.52%	109.1	15.47%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-4	-9.787e+00	0.0003	20.0	2.37%	6.1	0.87%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-4	-9.707e+00	0.0003	67.0	7.95%	34.9	4.95%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-4	-9.678e+00	0.0003	73.0	8.66%	38.9	5.51%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-4	-9.510e+00	0.0003	38.0	4.51%	16.4	2.32%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-4	-9.510e+00	0.0003	38.0	4.51%	16.4	2.32%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-4	-9.340e+00	0.0004	54.0	6.41%	26.4	3.74%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-3	-8.761e+00	0.0007	17.0	2.02%	5.1	0.72%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-3	-8.760e+00	0.0007	21.0	2.49%	7.4	1.05%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-3	-8.337e+00	0.0010	109.0	12.93%	65.9	9.34%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-8.328e+00	0.0010	7.0	0.83%	1.2	0.17%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-8.098e+00	0.0012	58.0	6.88%	31.0	4.39%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-3	-8.082e+00	0.0012	24.0	2.85%	9.7	1.38%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-3	-8.021e+00	0.0012	122.0	14.47%	75.8	10.75%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-3	-7.951e+00	0.0013	47.0	5.58%	23.2	3.29%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-7.619e+00	0.0018	66.0	7.83%	36.2	5.13%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-3	-7.437e+00	0.0021	70.0	8.30%	39.2	5.56%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-3	-7.002e+00	0.0032	36.0	4.27%	17.1	2.42%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-6.783e+00	0.0040	51.0	6.05%	27.8	3.95%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-2	-6.657e+00	0.0045	233.0	27.64%	163.6	23.18%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-2	-6.531e+00	0.0049	6.0	0.71%	0.0	0.00%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-6.531e+00	0.0049	6.0	0.71%	1.6	0.23%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-6.433e+00	0.0053	93.0	11.03%	57.3	8.12%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-2	-6.350e+00	0.0057	69.0	8.19%	40.2	5.70%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-6.349e+00	0.0057	101.0	11.98%	63.4	8.99%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-6.073e+00	0.0074	143.0	16.96%	95.8	13.58%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-2	-6.037e+00	0.0075	123.0	14.59%	80.1	11.35%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-6.020e+00	0.0076	18.0	2.14%	7.2	1.03%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-5.759e+00	0.0097	46.0	5.46%	25.7	3.65%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-5.740e+00	0.0097	8.0	0.95%	2.4	0.35%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-2	-5.740e+00	0.0097	8.0	0.95%	2.7	0.39%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-5.580e+00	0.0112	12.0	1.42%	4.6	0.65%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-2	-5.562e+00	0.0113	10.0	1.19%	3.5	0.49%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-2	-5.204e+00	0.0159	22.0	2.61%	10.9	1.55%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-4.986e+00	0.0195	40.0	4.74%	22.8	3.23%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-4.957e+00	0.0199	152.0	18.03%	105.2	14.91%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-4.949e+00	0.0199	20.0	2.37%	9.8	1.38%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-2	-4.882e+00	0.0210	5.0	0.59%	0.8	0.11%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-4.870e+00	0.0210	47.0	5.58%	27.7	3.93%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-2	-4.662e+00	0.0255	134.0	15.90%	92.4	13.10%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-4.486e+00	0.0301	7.0	0.83%	2.6	0.37%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-4.260e+00	0.0373	37.0	4.39%	21.2	3.01%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-4.014e+00	0.0472	71.0	8.42%	46.4	6.57%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-4.010e+00	0.0472	171.0	20.28%	123.5	17.51%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.921e+00	0.0508	20.0	2.37%	10.6	1.50%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-3.907e+00	0.0510	72.0	8.54%	47.6	6.75%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.891e+00	0.0513	23.0	2.73%	12.8	1.81%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-3.817e+00	0.0547	36.0	4.27%	21.7	3.08%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-3.719e+00	0.0597	10.0	1.19%	4.2	0.60%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-3.718e+00	0.0597	103.0	12.22%	71.2	10.09%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-3.716e+00	0.0597	40.0	4.74%	24.5	3.48%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.714e+00	0.0597	82.0	9.73%	55.7	7.90%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-3.656e+00	0.0611	27.0	3.20%	15.6	2.21%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.647e+00	0.0611	18.0	2.14%	9.6	1.36%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-3.641e+00	0.0611	37.0	4.39%	22.6	3.21%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-3.641e+00	0.0611	37.0	4.39%	22.0	3.12%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-3.581e+00	0.0634	365.0	43.30%	282.5	40.05%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-3.553e+00	0.0646	123.0	14.59%	87.7	12.44%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.370e+00	0.0769	16.0	1.90%	8.6	1.22%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-3.319e+00	0.0802	54.0	6.41%	35.3	5.00%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-3.243e+00	0.0858	47.0	5.58%	30.0	4.26%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-3.185e+00	0.0901	26.0	3.08%	15.0	2.13%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-2.917e+00	0.1168	134.0	15.90%	98.2	13.92%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-2.867e+00	0.1217	116.0	13.76%	84.5	11.98%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-2.753e+00	0.1351	152.0	18.03%	113.6	16.11%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.714e+00	0.1394	40.0	4.74%	26.1	3.70%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-2.669e+00	0.1446	22.0	2.61%	13.6	1.92%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-2.504e+00	0.1690	10.0	1.19%	5.5	0.78%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-2.496e+00	0.1690	104.0	12.34%	76.8	10.89%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.359e+00	0.1906	5.0	0.59%	2.1	0.29%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-2.359e+00	0.1906	5.0	0.59%	2.2	0.31%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-2.292e+00	0.2022	75.0	8.90%	54.8	7.77%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.256e+00	0.2078	14.0	1.66%	8.7	1.23%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.189e+00	0.2205	29.0	3.44%	19.1	2.71%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.161e+00	0.2249	188.0	22.30%	145.0	20.56%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.143e+00	0.2256	46.0	5.46%	32.5	4.61%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.143e+00	0.2256	46.0	5.46%	32.5	4.60%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.132e+00	0.2261	375.0	44.48%	299.3	42.43%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.125e+00	0.2261	3.0	0.36%	0.2	0.03%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.102e+00	0.2295	22.0	2.61%	15.0	2.12%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.083e+00	0.2322	138.0	16.37%	105.6	14.96%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.970e+00	0.2578	12.0	1.42%	8.0	1.13%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.933e+00	0.2657	245.0	29.06%	193.1	27.38%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.909e+00	0.2702	87.0	10.32%	65.7	9.31%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.893e+00	0.2725	54.0	6.41%	40.0	5.67%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.891e+00	0.2725	16.0	1.90%	10.3	1.47%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.885e+00	0.2725	32.0	3.80%	22.7	3.21%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.868e+00	0.2734	28.0	3.32%	19.1	2.70%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.827e+00	0.2828	37.0	4.39%	26.9	3.81%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-1.799e+00	0.2888	33.0	3.91%	23.7	3.35%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.622e+00	0.3420	54.0	6.41%	40.9	5.80%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.589e+00	0.3510	186.0	22.06%	147.5	20.91%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.578e+00	0.3525	7.0	0.83%	4.5	0.64%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.575e+00	0.3525	132.0	15.66%	103.6	14.69%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.544e+00	0.3599	23.0	2.73%	16.7	2.37%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.517e+00	0.3670	4.0	0.47%	2.4	0.34%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.366e+00	0.4240	96.0	11.39%	75.6	10.71%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.302e+00	0.4492	61.0	7.24%	47.8	6.78%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.287e+00	0.4528	46.0	5.46%	35.1	4.97%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.245e+00	0.4691	27.0	3.20%	20.5	2.91%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.235e+00	0.4709	5.0	0.59%	3.5	0.49%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.091e+00	0.5365	2.0	0.24%	1.2	0.17%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.091e+00	0.5365	2.0	0.24%	1.9	0.27%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.083e+00	0.5376	51.0	6.05%	40.9	5.79%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.072e+00	0.5400	20.0	2.37%	15.7	2.23%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.062e+00	0.5420	6.0	0.71%	4.1	0.58%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.046e+00	0.5469	74.0	8.78%	59.9	8.50%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.015e+00	0.5609	11.0	1.30%	8.1	1.15%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-9.076e-01	0.6204	34.0	4.03%	27.9	3.95%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-8.940e-01	0.6249	269.0	31.91%	222.5	31.54%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-8.868e-01	0.6256	29.0	3.44%	23.6	3.34%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-8.810e-01	0.6256	46.0	5.46%	37.9	5.37%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.701e-01	0.6284	181.0	21.47%	149.1	21.13%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.501e-01	0.6372	8.0	0.95%	6.0	0.85%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-7.789e-01	0.6801	32.0	3.80%	26.5	3.76%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-7.628e-01	0.6870	146.0	17.32%	121.0	17.15%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-7.291e-01	0.7021	4.0	0.47%	3.6	0.51%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-7.291e-01	0.7021	4.0	0.47%	3.6	0.51%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-7.192e-01	0.7049	10.0	1.19%	8.7	1.24%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.868e-01	0.7197	29.0	3.44%	24.4	3.45%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.868e-01	0.7197	29.0	3.44%	24.4	3.45%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.637e-01	0.7322	36.0	4.27%	30.3	4.29%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-6.002e-01	0.7757	108.0	12.81%	91.1	12.92%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-5.932e-01	0.7768	447.0	53.02%	375.3	53.19%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-5.607e-01	0.7978	34.0	4.03%	29.9	4.23%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-5.045e-01	0.8392	23.0	2.73%	20.3	2.88%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.004e-01	0.8392	154.0	18.27%	131.2	18.60%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-5.004e-01	0.8392	16.0	1.90%	14.8	2.10%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-4.908e-01	0.8392	123.0	14.59%	105.4	14.94%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-4.648e-01	0.8539	46.0	5.46%	40.5	5.74%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.541e-01	0.8583	18.0	2.14%	16.7	2.37%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-4.211e-01	0.8822	175.0	20.76%	150.9	21.39%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-3.813e-01	0.9131	22.0	2.61%	20.3	2.88%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.709e-01	0.9131	2.0	0.24%	2.8	0.39%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.709e-01	0.9131	2.0	0.24%	2.8	0.39%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-3.630e-01	0.9131	3.0	0.36%	3.4	0.48%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-3.630e-01	0.9131	3.0	0.36%	3.6	0.52%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-3.599e-01	0.9131	1.0	0.12%	0.0	0.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.599e-01	0.9131	1.0	0.12%	0.0	0.00%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.599e-01	0.9131	1.0	0.12%	1.3	0.18%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-3.599e-01	0.9131	1.0	0.12%	0.0	0.00%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-3.518e-01	0.9131	24.0	2.85%	22.0	3.12%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-3.439e-01	0.9131	77.0	9.13%	68.7	9.74%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.382e-01	0.9131	5.0	0.59%	5.4	0.76%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.258e-01	0.9131	26.0	3.08%	24.2	3.42%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.607e-01	0.9622	12.0	1.42%	12.9	1.84%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.432e-01	0.9742	14.0	1.66%	14.2	2.02%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.351e-01	0.9772	15.0	1.78%	15.3	2.16%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.273e-01	0.9799	16.0	1.90%	16.4	2.33%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.223e-01	0.9799	296.0	35.11%	257.8	36.54%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.199e-01	0.9799	17.0	2.02%	17.9	2.54%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.199e-01	0.9799	17.0	2.02%	17.4	2.47%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.989e-01	0.9884	134.0	15.90%	120.2	17.04%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.723e-01	1.0000	6.0	0.71%	7.1	1.01%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.715e-01	1.0000	8.0	0.95%	9.7	1.38%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.671e-01	1.0000	10.0	1.19%	11.7	1.65%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.548e-01	1.0000	3.0	0.36%	4.2	0.60%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.510e-01	1.0000	15.0	1.78%	16.9	2.39%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.374e-01	1.0000	71.0	8.42%	67.1	9.51%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.258e-01	1.0000	91.0	10.79%	85.7	12.15%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.232e-01	1.0000	47.0	5.58%	46.0	6.52%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.214e-01	1.0000	84.0	9.96%	79.5	11.27%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.121e-01	1.0000	27.0	3.20%	28.7	4.06%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-9.677e-02	1.0000	11.0	1.30%	13.9	1.97%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-9.561e-02	1.0000	1.0	0.12%	2.1	0.30%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-8.794e-02	1.0000	6.0	0.71%	8.4	1.19%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.323e-02	1.0000	29.0	3.44%	31.4	4.45%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.496e-02	1.0000	140.0	16.61%	131.3	18.62%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-5.815e-02	1.0000	84.0	9.96%	82.9	11.75%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-5.190e-02	1.0000	26.0	3.08%	29.6	4.19%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.158e-02	1.0000	57.0	6.76%	58.7	8.33%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-4.189e-02	1.0000	140.0	16.61%	133.0	18.86%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.858e-02	1.0000	5.0	0.59%	8.2	1.16%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-3.286e-02	1.0000	4.0	0.47%	7.4	1.05%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.134e-02	1.0000	32.0	3.80%	36.9	5.24%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.785e-02	1.0000	1.0	0.12%	3.5	0.50%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.547e-02	1.0000	8.0	0.95%	12.2	1.73%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.129e-02	1.0000	20.0	2.37%	25.9	3.68%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.959e-02	1.0000	167.0	19.81%	160.8	22.79%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.762e-02	1.0000	108.0	12.81%	108.2	15.33%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.523e-02	1.0000	10.0	1.19%	16.0	2.26%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.414e-02	1.0000	289.0	34.28%	267.6	37.93%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.104e-02	1.0000	7.0	0.83%	12.4	1.76%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-8.486e-03	1.0000	11.0	1.30%	17.3	2.45%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-8.212e-03	1.0000	38.0	4.51%	45.1	6.40%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-7.724e-03	1.0000	22.0	2.61%	29.7	4.21%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.136e-03	1.0000	2.0	0.24%	6.1	0.87%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-5.272e-03	1.0000	36.0	4.27%	44.9	6.37%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.331e-03	1.0000	21.0	2.49%	29.1	4.13%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.136e-03	1.0000	281.0	33.33%	268.4	38.05%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.731e-03	1.0000	185.0	21.95%	186.0	26.36%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.266e-03	1.0000	8.0	0.95%	16.9	2.39%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.230e-04	1.0000	155.0	18.39%	166.2	23.56%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.000e-06	1.0000	133.0	15.78%	155.6	22.05%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.01%