Information for motif1


Reverse Opposite:

p-value:1e-142
log p-value:-3.275e+02
Information Content per bp:1.688
Number of Target Sequences with motif630.0
Percentage of Target Sequences with motif19.85%
Number of Background Sequences with motif177.2
Percentage of Background Sequences with motif6.33%
Average Position of motif in Targets99.7 +/- 52.3bp
Average Position of motif in Background97.8 +/- 58.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0005.1_Forkhead_class/Jaspar

Match Rank:1
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:WAARTAAACA
-AAATAAACA

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.94
Offset:0
Orientation:forward strand
Alignment:WAARTAAACA
AAAGTAAACA

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:3
Score:0.94
Offset:0
Orientation:forward strand
Alignment:WAARTAAACA
AAAGTAAACA

MA0148.3_FOXA1/Jaspar

Match Rank:4
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-WAARTAAACA----
CAAAGTAAACANNNN

MA0047.2_Foxa2/Jaspar

Match Rank:5
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--WAARTAAACA
NCTAAGTAAACA

MA0042.1_FOXI1/Jaspar

Match Rank:6
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:WAARTAAACA---
-AAACAAACANNC

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:7
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:WAARTAAACA--
TATGTAAACANG

MA0593.1_FOXP2/Jaspar

Match Rank:8
Score:0.88
Offset:1
Orientation:forward strand
Alignment:WAARTAAACA--
-AAGTAAACAAA

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.87
Offset:-5
Orientation:forward strand
Alignment:-----WAARTAAACA--
NNNVCTGWGYAAACASN

MA0481.1_FOXP1/Jaspar

Match Rank:10
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--WAARTAAACA---
CAAAAGTAAACAAAG