Information for motif10


Reverse Opposite:

p-value:1e-38
log p-value:-8.821e+01
Information Content per bp:1.564
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif1.54%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets82.4 +/- 52.2bp
Average Position of motif in Background119.8 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CWCAGCTGGAGS
CACAGCAGGGGG

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---CWCAGCTGGAGS
CCACACAGCAGGAGA

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---CWCAGCTGGAGS
CCACACAGCAGGAGA

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CWCAGCTGGAGS
GAGCACAGCAGGACA

MA0522.1_Tcf3/Jaspar

Match Rank:5
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CWCAGCTGGAGS
CACAGCTGCAG-

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:6
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CWCAGCTGGAGS
NAHCAGCTGD---

MA0500.1_Myog/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CWCAGCTGGAGS
GACAGCTGCAG-

MA0521.1_Tcf12/Jaspar

Match Rank:8
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CWCAGCTGGAGS
AACAGCTGCAG-

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CWCAGCTGGAGS
-NCAGCTGCTG-

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CWCAGCTGGAGS
--CAGCTGNT--