Information for motif11


Reverse Opposite:

p-value:1e-35
log p-value:-8.215e+01
Information Content per bp:1.667
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets102.9 +/- 59.6bp
Average Position of motif in Background80.9 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GTGTCAACGG
AGGTGTGAAM--

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GTGTCAACGG
AGGTGTCA----

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GTGTCAACGG
AGGTGTTAAT--

PH0164.1_Six4/Jaspar

Match Rank:4
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------GTGTCAACGG-
TNNNNGGTGTCATNTNT

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GTGTCAACGG
TTGCCAAG--

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------GTGTCAACGG-
CTCCAGGGGTCAATTGA

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTGTCAACGG-
SCTGTCARCACC

MA0009.1_T/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GTGTCAACGG
CTAGGTGTGAA---

PH0105.1_Meis3/Jaspar

Match Rank:9
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------GTGTCAACGG
AATTACCTGTCAATAC

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------GTGTCAACGG
AAGCACCTGTCAATAT