Information for motif13


Reverse Opposite:

p-value:1e-33
log p-value:-7.710e+01
Information Content per bp:1.511
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets101.9 +/- 54.6bp
Average Position of motif in Background150.0 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TCCCCTGCGGGG
CCCCCTGCTGTG

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TCCCCTGCGGGG---
TCNCCTGCTGNGNNN

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TCCCCTGCGGGG
GTCCCCAGGGGA-

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TCCCCTGCGGGG-
CACCCCCGGGGGGG

PB0103.1_Zic3_1/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TCCCCTGCGGGG-
CCCCCCCGGGGGGGT

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TCCCCTGCGGGG---
TNTCCTGCTGTGNNG

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TCCCCTGCGGGG--
NTCCCCTCAGGGANT

PB0102.1_Zic2_1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TCCCCTGCGGGG-
CCCCCCCGGGGGGGT

MA0524.1_TFAP2C/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TCCCCTGCGGGG---
TGCCCTGGGGCNANN

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCCCCTGCGGGG--
ATTGCCTGAGGCGAA