Information for motif2


Reverse Opposite:

p-value:1e-69
log p-value:-1.591e+02
Information Content per bp:1.899
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets99.8 +/- 39.4bp
Average Position of motif in Background101.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:1
Score:0.86
Offset:-5
Orientation:forward strand
Alignment:-----GCCACCTRGTGG---
ANAGTGCCACCTGGTGGCCA

MA0139.1_CTCF/Jaspar

Match Rank:2
Score:0.85
Offset:-4
Orientation:reverse strand
Alignment:----GCCACCTRGTGG---
TAGCGCCCCCTGGTGGCCA

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.84
Offset:-7
Orientation:forward strand
Alignment:-------GCCACCTRGTGG-
CNNBRGCGCCCCCTGSTGGC

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCCACCTRGTGG
NNCACCTGNN--

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCCACCTRGTGG
GCCATCTGTT--

MA0461.1_Atoh1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCCACCTRGTGG
GCCATCTG----

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCCACCTRGTGG
TGACACCT-----

MA0116.1_Zfp423/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCCACCTRGTGG---
GGCACCCAGGGGTGC

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCCACCTRGTGG
--CACGTGNT--

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCCACCTRGTGG
GCCAGCTGBTNB